RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 UPP2O95045 317 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 PDGFBP01127 241 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-204ENST00000549064 CKBP12277 381 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 BMP2P12643 396 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 ALDH5A1P51649 535 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-204ENST00000549064 HTRA4P83105 476 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-204ENST00000549064 ATP8B2P98198 1209 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 HYAL1Q12794 435 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 SMAD4Q13485 552 aaKnown RBP7.7□□□□□ -1.18
LIMA1-204ENST00000549064 IKBKEQ14164 716 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 GRM2Q14416 872 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 TTF1Q15361 905 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-204ENST00000549064 PKN1Q16512 942 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 RASGRP2Q7LDG7 609 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 LYSMD3Q7Z3D4 306 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 AMOTL1Q8IY63 956 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 TMEM192Q8IY95 271 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 CCDC155Q8N6L0 562 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 WNT8BQ93098 351 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 IGFLR1Q9H665 355 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 GPAMQ9HCL2 828 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 KBTBD4Q9NVX7 518 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 ABI2Q9NYB9 513 aaPredicted RBP7.7□□□□□ -1.18
LIMA1-204ENST00000549064 NOP58Q9Y2X3 529 aaKnown RBP7.7□□□□□ -1.18
LIMA1-204ENST00000549064 SLC4A4Q9Y6R1 1079 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 ZFHX4Q86UP3 3567 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 ZBED9Q6R2W3 1325 aa7.7□□□□□ -1.18
LIMA1-204ENST00000549064 IGKV6D-41A0A0C4DH26 115 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 CAPN5O15484 640 aaPredicted RBP7.69□□□□□ -1.18
LIMA1-204ENST00000549064 PRDM1O75626 825 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 ARIH2O95376 493 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 FGRP09769 529 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 BMP3P12645 472 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 TRIM27P14373 513 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 EPB42P16452 691 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 ADD2P35612 726 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 RARSP54136 660 aaKnown RBP7.69□□□□□ -1.18
LIMA1-204ENST00000549064 SIGLEC14Q08ET2 396 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 TKFCQ3LXA3 575 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 ZNF618Q5T7W0 954 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 SLFN13Q68D06 897 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 FBXO11Q86XK2 927 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 ARHGAP45Q92619 1136 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 ASIC4Q96FT7 647 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 CEP95Q96GE4 821 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 SUV39H2Q9H5I1 410 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 PIF1Q9H611 641 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 IL1RAPL2Q9NP60 686 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 LATS2Q9NRM7 1088 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 CD207Q9UJ71 328 aa7.69□□□□□ -1.18
LIMA1-204ENST00000549064 KIAA1671Q9BY89 1806 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 MYH7BA7E2Y1 1941 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 GVINP1Q7Z2Y8 2422 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 A0A1B0GTH6 734 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 GRM6O15303 877 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 KPNA6O60684 536 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 EFCAB14O75071 495 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 AMHP03971 560 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 CES1P23141 567 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 STAT2P52630 851 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 ZNF200P98182 395 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-204ENST00000549064 RBL2Q08999 1139 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 IKQ13123 557 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-204ENST00000549064 BAATQ14032 418 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-204ENST00000549064 PPP2R5BQ15173 497 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 TRIM71Q2Q1W2 868 aaKnown RBP7.68□□□□□ -1.18
LIMA1-204ENST00000549064 BRDTQ58F21 947 aaPredicted RBP7.68□□□□□ -1.18
LIMA1-204ENST00000549064 NOP9Q86U38 636 aaKnown RBP7.68□□□□□ -1.18
LIMA1-204ENST00000549064 TRMT2AQ8IZ69 625 aaKnown RBP7.68□□□□□ -1.18
LIMA1-204ENST00000549064 DBF4BQ8NFT6 615 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 KAT2BQ92831 832 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 GPRASP2Q96D09 838 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 SAMD11Q96NU1 681 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 YME1L1Q96TA2 773 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 RUBCNLQ9H714 662 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 MKNK2Q9HBH9 465 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 MTMR4Q9NYA4 1195 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 KANSL3Q9P2N6 904 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 HDAC6Q9UBN7 1215 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 EXOC6BQ9Y2D4 811 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 RAD50Q92878 1312 aa7.68□□□□□ -1.18
LIMA1-204ENST00000549064 PTPDC1A2A3K4 754 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 FIGNL2A6NMB9 653 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 MINDY4BA8MYZ0 360 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 LOC730098B7Z3J9 87 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 NFIBO00712 420 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 NCK2O43639 380 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 STK10O94804 968 aaKnown RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 PARNO95453 639 aaKnown RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 TXNP10599 105 aaKnown RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 ATF4P18848 351 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 CTNNB1P35222 781 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 NBL1P41271 181 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 NDUFV1P49821 464 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 RRP1P56182 461 aaKnown RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 WDR44Q5JSH3 913 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 TTC39BQ5VTQ0 682 aaPredicted RBP7.67□□□□□ -1.18
LIMA1-204ENST00000549064 SLC30A10Q6XR72 485 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 KCTD1Q719H9 257 aa7.67□□□□□ -1.18
LIMA1-204ENST00000549064 FRMD5Q7Z6J6 570 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms