RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RWDD3Q9Y3V2 267 aa9.62□□□□□ -0.87
USP28-215ENST00000545608 MRPL42Q9Y6G3 142 aaKnown RBP9.62□□□□□ -0.87
USP28-215ENST00000545608 KAT6AQ92794 2004 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 CCDC196A0A1B0GTZ2 297 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 FAM86C2PA6NEL3 165 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 ZBTB42B2RXF5 422 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 IPO5O00410 1097 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 PRPF3O43395 683 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 EDIL3O43854 480 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 MGEA5O60502 916 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 GPR37L1O60883 481 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 CSPG5O95196 566 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 IBSPP21815 317 aaPredicted RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 DNAJB1P25685 340 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 SSTR3P32745 418 aaPredicted RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 GTF2F1P35269 517 aaKnown RBP eCLIP9.61□□□□□ -0.87
USP28-215ENST00000545608 DLX2Q07687 328 aaPredicted RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 HYAL1Q12794 435 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 NFX1Q12986 1120 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 NTRK3Q16288 839 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 CTC1Q2NKJ3 1217 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 PUS10Q3MIT2 529 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 PAN2Q504Q3 1202 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 ZNF484Q5JVG2 852 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 TMEM31Q5JXX7 168 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 C6orf132Q5T0Z8 1188 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 MIS18BP1Q6P0N0 1132 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 BLOC1S2Q6QNY1 142 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 TRMT1LQ7Z2T5 733 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 CMTR2Q8IYT2 770 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 ZNF454Q8N9F8 522 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 SPPL3Q8TCT6 385 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 RASGRP4Q8TDF6 673 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 TMEM40Q8WWA1 233 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 PHKBQ93100 1093 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 ZDHHC16Q969W1 377 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 ZNF577Q9BSK1 485 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 PLVAPQ9BX97 442 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 C6orf50Q9HD87 102 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 ERVK-5Q9HDB9 667 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 PLAGL2Q9UPG8 496 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 GINS2Q9Y248 185 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 NOC2LQ9Y3T9 749 aaKnown RBP9.61□□□□□ -0.87
USP28-215ENST00000545608 TTC3P53804 2025 aa9.61□□□□□ -0.87
USP28-215ENST00000545608 BDP1A6H8Y1 2624 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 LINC01565O15544 149 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 RPS6KA5O75582 802 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 MMP1P03956 469 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 ITGB1P05556 798 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 STAG3L1P0CL83 205 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 RPS6KB1P23443 525 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 CIITAP33076 1130 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 IRS1P35568 1242 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 SARSP49591 514 aaKnown RBP9.6□□□□□ -0.87
USP28-215ENST00000545608 PRR16Q569H4 304 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 REXO1Q8N1G1 1221 aaKnown RBP9.6□□□□□ -0.87
USP28-215ENST00000545608 FBXL16Q8N461 479 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 KLHL23Q8NBE8 558 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 P2RX5Q93086 422 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 PPP1R16BQ96T49 567 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 AGXT2Q9BYV1 514 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 IGFLR1Q9H665 355 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 TBC1D22BQ9NU19 505 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 ST3GAL5Q9UNP4 418 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 MAFBQ9Y5Q3 323 aaPredicted RBP9.6□□□□□ -0.87
USP28-215ENST00000545608 MUC3AQ02505 3323 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 COL1A2P08123 1366 aa9.6□□□□□ -0.87
USP28-215ENST00000545608 NCK2O43639 380 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 GPR32O75388 356 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 C22orf31O95567 290 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 GNA11P29992 359 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 PDIA3P30101 505 aaKnown RBP9.59□□□□□ -0.87
USP28-215ENST00000545608 CCT2P78371 535 aaKnown RBP9.59□□□□□ -0.87
USP28-215ENST00000545608 SETQ01105 290 aaPredicted RBP9.59□□□□□ -0.87
USP28-215ENST00000545608 CLUL1Q15846 466 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 KIZQ2M2Z5 673 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 NAALADL2Q58DX5 795 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 FAM102BQ5T8I3 360 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 MCTP2Q6DN12 878 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 ZNF746Q6NUN9 644 aaPredicted RBP9.59□□□□□ -0.87
USP28-215ENST00000545608 ADGRD2Q7Z7M1 963 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 METTL3Q86U44 580 aaKnown RBP9.59□□□□□ -0.87
USP28-215ENST00000545608 FAM228AQ86W67 206 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 CKAP2LQ8IYA6 745 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 CCDC12Q8WUD4 166 aaPredicted RBP9.59□□□□□ -0.87
USP28-215ENST00000545608 LENG9Q96B70 501 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 ADAM2Q99965 735 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 SLC26A6Q9BXS9 759 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 NCOA5Q9HCD5 579 aaKnown RBP9.59□□□□□ -0.87
USP28-215ENST00000545608 RGS18Q9NS28 235 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 VPS54Q9P1Q0 977 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 GABBR1Q9UBS5 961 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 LRFN2Q9ULH4 789 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 PCDHB7Q9Y5E2 793 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 PCDHA10Q9Y5I2 948 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 TRANK1O15050 2925 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 NID2Q14112 1375 aa9.59□□□□□ -0.87
USP28-215ENST00000545608 C9IYK1 514 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 GPR182O15218 404 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 MBTPS2O43462 519 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms