RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 SEL1LQ9UBV2 794 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 TRIM10Q9UDY6 481 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 ZNFX1Q9P2E3 1918 aaKnown RBP15.76■□□□□ 0.11
VPS33A-209ENST00000544349 DNAJC25-GNG10A0A024R161 153 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 KIF5CO60282 957 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 PNMA6AP0CW24 399 aaPredicted RBP15.76■□□□□ 0.11
VPS33A-209ENST00000544349 MTIF2P46199 727 aaKnown RBP15.76■□□□□ 0.11
VPS33A-209ENST00000544349 KNOP1Q1ED39 458 aaKnown RBP15.76■□□□□ 0.11
VPS33A-209ENST00000544349 BMT2Q1RMZ1 405 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 SPRYD7Q5W111 196 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 PPP4R3CPQ6ZMV5 832 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 ANKRD23Q86SG2 305 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 SMCR8Q8TEV9 937 aaPredicted RBP15.76■□□□□ 0.11
VPS33A-209ENST00000544349 ANKEF1Q9NU02 776 aa15.76■□□□□ 0.11
VPS33A-209ENST00000544349 RASSF10A6NK89 507 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 HIP1RO75146 1068 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 PRPF6O94906 941 aaKnown RBP15.75■□□□□ 0.11
VPS33A-209ENST00000544349 GCNT3O95395 438 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 PGK2P07205 417 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 PSAPP07602 524 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 ZBTB48P10074 688 aaPredicted RBP15.75■□□□□ 0.11
VPS33A-209ENST00000544349 HOXD13P35453 343 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 ACTR2P61160 394 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 MAPK7Q13164 816 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 CST9Q5W186 159 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 FGD4Q96M96 766 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 FIZ1Q96SL8 496 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 DNAJC7Q99615 494 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 GABBR1Q9UBS5 961 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 TFR2Q9UP52 801 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 TELO2Q9Y4R8 837 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 LRRC37A2A6NM11 1700 aa15.75■□□□□ 0.11
VPS33A-209ENST00000544349 A0A1W2PQC6 194 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 ITGBL1O95965 494 aaPredicted RBP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 DNM2P50570 870 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 EDRF1Q3B7T1 1238 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 MIIPQ5JXC2 388 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 WDR78Q5VTH9 848 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 WDR59Q6PJI9 974 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 ABHD15Q6UXT9 468 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 ZC3H3Q8IXZ2 948 aaKnown RBP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 DAW1Q8N136 415 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 GPRC5AQ8NFJ5 357 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 MPHOSPH6Q99547 160 aaKnown RBP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 NOC4LQ9BVI4 516 aaKnown RBP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 TTYH3Q9C0H2 523 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 PORCNQ9H237 461 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 TRAF3IP3Q9Y228 551 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 TMEM150BA6NC51 233 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 EIF3DO15371 548 aaKnown RBP eCLIP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 DKC1O60832 514 aaKnown RBP eCLIP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 NMT1P30419 496 aaKnown RBP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 SP4Q02446 784 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 UTP14CQ5TAP6 766 aaKnown RBP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 SWSAP1Q6NVH7 229 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 CYFIP1Q7L576 1253 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 ATP6V0A1Q93050 837 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 CEP63Q96MT8 703 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 EFCC1Q9HA90 598 aa15.74■□□□□ 0.11
VPS33A-209ENST00000544349 PUF60Q9UHX1 559 aaKnown RBP15.74■□□□□ 0.11
VPS33A-209ENST00000544349 PDXKO00764 312 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 BACH1O14867 736 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 ZNF862O60290 1169 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 SORBS3O60504 671 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 USO1O60763 962 aaKnown RBP15.73■□□□□ 0.11
VPS33A-209ENST00000544349 NDUFA10O95299 355 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 XKR9Q5GH70 373 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 ODR4Q5SWX8 454 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 MIS18BP1Q6P0N0 1132 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 ANO5Q75V66 913 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 ZNF720Q7Z2F6 126 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 CCDC60Q8IWA6 550 aaPredicted RBP15.73■□□□□ 0.11
VPS33A-209ENST00000544349 FAM178BQ8IXR5 827 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 CCDC43Q96MW1 224 aaKnown RBP15.73■□□□□ 0.11
VPS33A-209ENST00000544349 SH2D3AQ9BRG2 576 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 SASH3O75995 380 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 STBD1O95210 358 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 ATG7O95352 703 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 TGFB3P10600 412 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 PLA2G4AP47712 749 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 CCNA1P78396 465 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 MAN2A1Q16706 1144 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 PLA2G4FQ68DD2 849 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 TMCO3Q6UWJ1 677 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 MAEAQ7L5Y9 396 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 OTUD6AQ7L8S5 288 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 TRMT1LQ7Z2T5 733 aaKnown RBP15.73■□□□□ 0.11
VPS33A-209ENST00000544349 ANKRD13CQ8N6S4 541 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 ZNF526Q8TF50 670 aaPredicted RBP15.73■□□□□ 0.11
VPS33A-209ENST00000544349 GOLGA1Q92805 767 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 TIPINQ9BVW5 301 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 AGPAT5Q9NUQ2 364 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 CDC23Q9UJX2 597 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 CAPN11Q9UMQ6 739 aa15.73■□□□□ 0.11
VPS33A-209ENST00000544349 TRPM7Q96QT4 1865 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 CALUO43852 315 aaPredicted RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 GNA14O95837 355 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 SUPT20HL2P0C7V6 817 aa15.72■□□□□ 0.11
VPS33A-209ENST00000544349 UBA1P22314 1058 aaKnown RBP15.72■□□□□ 0.11
VPS33A-209ENST00000544349 GCLCP48506 637 aaPredicted RBP15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms