RNA–Protein interactions for RNA: ENST00000544040.5

CHD4-210, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CHD4, Length 6,514 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-210ENST00000544040 PARP9Q8IXQ6 854 aa16.52■□□□□ 0.23
CHD4-210ENST00000544040 ICA1LQ8NDH6 482 aa16.52■□□□□ 0.23
CHD4-210ENST00000544040 SLC26A7Q8TE54 656 aa16.52■□□□□ 0.23
CHD4-210ENST00000544040 NLRP4Q96MN2 994 aa16.52■□□□□ 0.23
CHD4-210ENST00000544040 WDR11Q9BZH6 1224 aa16.52■□□□□ 0.23
CHD4-210ENST00000544040 GDAQ9Y2T3 454 aa16.52■□□□□ 0.23
CHD4-210ENST00000544040 SRPRBQ9Y5M8 271 aaKnown RBP16.52■□□□□ 0.23
CHD4-210ENST00000544040 CCDC159P0C7I6 412 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 TTC30AQ86WT1 665 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 VPS39Q96JC1 886 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 FAM81BQ96LP2 452 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 LBHD1Q9BQE6 289 aaPredicted RBP16.51■□□□□ 0.23
CHD4-210ENST00000544040 SH2B2O14492 632 aaPredicted RBP16.51■□□□□ 0.23
CHD4-210ENST00000544040 EFTUD2Q15029 972 aaKnown RBP eCLIP16.51■□□□□ 0.238e-7■■■■■ 32.2
CHD4-210ENST00000544040 NKX1-1Q15270 411 aaPredicted RBP16.51■□□□□ 0.23
CHD4-210ENST00000544040 PI16Q6UXB8 463 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 KIAA2013Q8IYS2 634 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 ZFYVE19Q96K21 471 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 FSD1LQ9BXM9 530 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 CHUKO15111 745 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 GPATCH4Q5T3I0 446 aaKnown RBP16.51■□□□□ 0.23
CHD4-210ENST00000544040 RNF135Q8IUD6 432 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 LRRC37BQ96QE4 947 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 ZNF229Q9UJW7 825 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 DNAJC12Q9UKB3 198 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 GRIN2AQ12879 1464 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 LMTK3Q96Q04 1460 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 KDM1AO60341 852 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 ZFXP17010 805 aaPredicted RBP16.51■□□□□ 0.23
CHD4-210ENST00000544040 ACBD5Q5T8D3 534 aaPredicted RBP16.51■□□□□ 0.23
CHD4-210ENST00000544040 OTULINQ96BN8 352 aa16.51■□□□□ 0.23
CHD4-210ENST00000544040 PUS7LQ9H0K6 701 aaKnown RBP16.51■□□□□ 0.23
CHD4-210ENST00000544040 ARHGEF10O15013 1369 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 PODXLO00592 558 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 MYCP01106 439 aaPredicted RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 MXD4Q14582 209 aaPredicted RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 COL17A1Q9UMD9 1497 aaPredicted RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 HNRNPCP07910 306 aaKnown RBP eCLIP16.5■□□□□ 0.23
CHD4-210ENST00000544040 PEX3P56589 373 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 DSTYKQ6XUX3 929 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 NLRP14Q86W24 1093 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 ZNF507Q8TCN5 953 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 ATP8B3O60423 1300 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 RBBP7Q16576 425 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 NFRKBQ6P4R8 1299 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 IL17REQ8NFR9 667 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 AP5M1Q9H0R1 490 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 KIAA0232Q92628 1395 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 GMNCA6NCL1 334 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 USP17L3A6NCW0 530 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 USP17L4A6NCW7 530 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 PDE8BO95263 885 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 PPP1R2P3Q6NXS1 205 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 CC2D1AQ6P1N0 951 aaPredicted RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 USP17L1Q7RTZ2 530 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 PPM1NQ8N819 430 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 PIGOQ8TEQ8 1089 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 CHCHD3Q9NX63 227 aaKnown RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 STOML1Q9UBI4 398 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 WBP4O75554 376 aaKnown RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 USP17L8P0C7I0 530 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 SSTR3P32745 418 aaPredicted RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 AARSP49588 968 aaKnown RBP eCLIP16.5■□□□□ 0.232e-6■■■□□ 18.8
CHD4-210ENST00000544040 RESTQ13127 1097 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 SYDE2Q5VT97 1194 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 LRRC8EQ6NSJ5 796 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 CNOT8Q9UFF9 292 aaKnown RBP16.5■□□□□ 0.23
CHD4-210ENST00000544040 RCOR1Q9UKL0 485 aa16.5■□□□□ 0.23
CHD4-210ENST00000544040 PCCAP05165 728 aaPredicted RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 PAPOLAP51003 745 aaKnown RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 VCPP55072 806 aaKnown RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 PPP2R2AP63151 447 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 ARHGAP27Q6ZUM4 889 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 RNF25Q96BH1 459 aaPredicted RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 ALG13Q9NP73 1137 aaKnown RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 NDE1Q9NXR1 346 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 HDAC6Q9UBN7 1215 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 KPNA7A9QM74 516 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 SKOR1P84550 965 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 CYTH1Q15438 398 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 IFT43Q96FT9 208 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 ETNK1Q9HBU6 452 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 AFF4Q9UHB7 1163 aaKnown RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 YEATS2Q9ULM3 1422 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 CFAP69A5D8W1 941 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 TRIM33Q9UPN9 1127 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 IFNA8P32881 189 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 PSMD2Q13200 908 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 POLD4Q9HCU8 107 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 ABHD10Q9NUJ1 306 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 ABCA10Q8WWZ4 1543 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 OCM2P0CE71 109 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 OCMP0CE72 109 aaPredicted RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 PCP11498 1178 aaKnown RBP16.49■□□□□ 0.23
CHD4-210ENST00000544040 ARFIP2P53365 341 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 PROSER3Q2NL68 480 aa16.49■□□□□ 0.23
CHD4-210ENST00000544040 MKRN3Q13064 507 aaKnown RBP16.48■□□□□ 0.23
CHD4-210ENST00000544040 RINLQ6ZS11 566 aa16.48■□□□□ 0.23
CHD4-210ENST00000544040 RHOT2Q8IXI1 618 aa16.48■□□□□ 0.23
CHD4-210ENST00000544040 ZCCHC17Q9NP64 241 aaKnown RBP16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms