RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RAD51AP2	Q09MP3	1159 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	HIC1	Q14526	733 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	EMC2	Q15006	297 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	E2F4	Q16254	413 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	LRRC26	Q2I0M4	334 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	LONRF3	Q496Y0	759 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	NAALADL2	Q58DX5	795 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	RINT1	Q6NUQ1	792 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	RSPH3	Q86UC2	560 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	LRRC71	Q8N4P6	559 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	STAM	Q92783	540 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	TMEM143	Q96AN5	459 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	MAP7D2	Q96T17	732 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	MTR	Q99707	1265 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	RUSC1	Q9BVN2	902 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	ZHX3	Q9H4I2	956 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	KIAA0100	Q14667	2235 aa	Known RBP	11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	KIAA1217	Q5T5P2	1943 aa		11.29	□□□□□ -0.6
CPSF7-221	ENST00000543545	NR1I2	O75469	434 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	C22orf31	O95567	290 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	CLCN3	P51790	818 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	MARCH8	Q5T0T0	291 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	KANK3	Q6NY19	840 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	TAF2	Q6P1X5	1199 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	RUFY4	Q6ZNE9	571 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	KRBA2	Q6ZNG9	492 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	DYM	Q7RTS9	669 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	MCPH1	Q8NEM0	835 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	LRRC15	Q8TF66	581 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	TCP11	Q8WWU5	503 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	SCLT1	Q96NL6	688 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	HTATIP2	Q9BUP3	242 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	DHX33	Q9H6R0	707 aa	Known RBP	11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	MAGEF1	Q9HAY2	307 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	POLD4	Q9HCU8	107 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	DACT1	Q9NYF0	836 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	SUCLA2	Q9P2R7	463 aa	Predicted RBP	11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	HOOK1	Q9UJC3	728 aa	Known RBP	11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	AKT3	Q9Y243	479 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	PCDHA2	Q9Y5H9	948 aa		11.28	□□□□□ -0.6
CPSF7-221	ENST00000543545	NPHP3-ACAD11	A0A0J9YXS1	232 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	SMIM35	A0A1B0GVV1	85 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	MBLAC1	A4D2B0	266 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	ACTN4	O43707	911 aa	Known RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	GAS2	O43903	313 aa	Known RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	TBCA	O75347	108 aa	Known RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	CAPN15	O75808	1086 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	FAM13A	O94988	1023 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	IDE	P14735	1019 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	PTMS	P20962	102 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	THPO	P40225	353 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	ADAM17	P78536	824 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	CACNB1	Q02641	598 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	PTK7	Q13308	1070 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	C1orf53	Q5VUE5	145 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	IER5	Q5VY09	327 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	C1orf186	Q6ZWK4	172 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	ANKRD33	Q7Z3H0	272 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	FAM126B	Q8IXS8	530 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	GRAMD1C	Q8IYS0	662 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	FMR1NB	Q8N0W7	255 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	ENGASE	Q8NFI3	743 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	DNAJB3	Q8WWF6	145 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	DPF3	Q92784	378 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	PAGE5	Q96GU1	130 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	TOX2	Q96NM4	488 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	PPP1R16B	Q96T49	567 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	POLR3F	Q9H1D9	316 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	BLZF1	Q9H2G9	400 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	TNMD	Q9H2S6	317 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	GPRC5C	Q9NQ84	441 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	PRDM5	Q9NQX1	630 aa	Predicted RBP	11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	TMEM39A	Q9NV64	488 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	KCND2	Q9NZV8	630 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	GINS2	Q9Y248	185 aa		11.27	□□□□□ -0.61
CPSF7-221	ENST00000543545	CENPF	P49454	3210 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	MYMK	A6NI61	221 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	SFI1	A8K8P3	1242 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545		M0QZ92	97 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	HIP1R	O75146	1068 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	MBD3	O95983	291 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	VTN	P04004	478 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	CLTB	P09497	229 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	GUCY2C	P25092	1073 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	HOXC8	P31273	242 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	ASIC1	P78348	528 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	TMEM62	Q0P6H9	643 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	DRP2	Q13474	957 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	BFSP2	Q13515	415 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	SNW1	Q13573	536 aa	Known RBP	11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	SNX17	Q15036	470 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	ARSH	Q5FYA8	562 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	UBE2Q1	Q7Z7E8	422 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	SERINC5	Q86VE9	423 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	RHPN2	Q8IUC4	686 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	KIAA0319L	Q8IZA0	1049 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	NME8	Q8N427	588 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	CCDC155	Q8N6L0	562 aa		11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	PRPF31	Q8WWY3	499 aa	Known RBP	11.26	□□□□□ -0.61
CPSF7-221	ENST00000543545	PSPC1	Q8WXF1	523 aa	Known RBP	11.26	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms