RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 MRPS27Q92552 414 aaKnown RBP13.56□□□□□ -0.24
DDX55-210ENST00000543016 CHAMP1Q96JM3 812 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 MAP7D2Q96T17 732 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 TRPV6Q9H1D0 765 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 BHMT2Q9H2M3 363 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 GDPD2Q9HCC8 539 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 TMEM39AQ9NV64 488 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 PRKAG2Q9UGJ0 569 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 KCNH3Q9ULD8 1083 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 WDR81Q562E7 1941 aa13.56□□□□□ -0.24
DDX55-210ENST00000543016 TCHHQ07283 1943 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 ASAP2O43150 1006 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 PLA2G4BP0C869 781 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 CYP11B2P19099 503 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 NPEPPSP55786 919 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 AMPD3Q01432 767 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 IER5Q5VY09 327 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 PLA2G4FQ68DD2 849 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 EFCAB12Q6NXP0 572 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 PADI6Q6TGC4 694 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 TRMT1LQ7Z2T5 733 aaKnown RBP13.55□□□□□ -0.24
DDX55-210ENST00000543016 LARP4BQ92615 738 aaKnown RBP13.55□□□□□ -0.24
DDX55-210ENST00000543016 RAD54LQ92698 747 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 CTAGE1Q96RT6 745 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 MTRQ99707 1265 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 ATP6V0A4Q9HBG4 840 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 PDLIM7Q9NR12 457 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 BMP2KQ9NSY1 1161 aaPredicted RBP13.55□□□□□ -0.24
DDX55-210ENST00000543016 TBX21Q9UL17 535 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 HPSEQ9Y251 543 aa13.55□□□□□ -0.24
DDX55-210ENST00000543016 E9PMD0 336 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 ZBTB39O15060 712 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 GUCY2CP25092 1073 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 UBE2HP62256 183 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 ZNF200P98182 395 aaPredicted RBP13.54□□□□□ -0.24
DDX55-210ENST00000543016 HIC1Q14526 733 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 MXD4Q14582 209 aaPredicted RBP13.54□□□□□ -0.24
DDX55-210ENST00000543016 EMC2Q15006 297 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 SV2BQ7L1I2 683 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 METTL13Q8N6R0 699 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 LINC01465Q8N7H1 131 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 FSIP1Q8NA03 581 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 TRAPPC12Q8WVT3 735 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 DPF3Q92784 378 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 TNMDQ9H2S6 317 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 BLOC1S4Q9NUP1 217 aa13.54□□□□□ -0.24
DDX55-210ENST00000543016 TMEM150BA6NC51 233 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 M0QZ92 97 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 POLR2DO15514 142 aaKnown RBP13.53□□□□□ -0.24
DDX55-210ENST00000543016 MYL1P05976 194 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 PFKFB1P16118 471 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 SYKP43405 635 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 SLC12A3P55017 1021 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 POU5F1BQ06416 359 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 E2F4Q16254 413 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 TRIM71Q2Q1W2 868 aaKnown RBP13.53□□□□□ -0.24
DDX55-210ENST00000543016 FAM26DQ5JW98 314 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 RINT1Q6NUQ1 792 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 KANK3Q6NY19 840 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 C1orf186Q6ZWK4 172 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 KCNK18Q7Z418 384 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 CEP57L1Q8IYX8 460 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 KIAA0319LQ8IZA0 1049 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 PSPC1Q8WXF1 523 aaKnown RBP13.53□□□□□ -0.24
DDX55-210ENST00000543016 KIFAP3Q92845 792 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 PLIN2Q99541 437 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 NOC4LQ9BVI4 516 aaKnown RBP13.53□□□□□ -0.24
DDX55-210ENST00000543016 HIPK3Q9H422 1215 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 SUGCTQ9HAC7 445 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 C17orf75Q9HAS0 396 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 SQORQ9Y6N5 450 aa13.53□□□□□ -0.24
DDX55-210ENST00000543016 LOXHD1Q8IVV2 1947 aa13.52□□□□□ -0.24
DDX55-210ENST00000543016 A0A1B0GVL5 298 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 TIMP1P01033 207 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 SSBP05455 408 aaKnown RBP eCLIP13.52□□□□□ -0.25
DDX55-210ENST00000543016 SLFN14P0C7P3 912 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 RAG1P15918 1043 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 SELPP16109 830 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 SCP2P22307 547 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 RFC2P35250 354 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 THPOP40225 353 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 PPP2R5AQ15172 486 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 NAALADL2Q58DX5 795 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 ZNF410Q86VK4 478 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 PDILTQ8N807 584 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 USP38Q8NB14 1042 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 PPP1R13LQ8WUF5 828 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 DNAJB3Q8WWF6 145 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 DRC1Q96MC2 740 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 PANK2Q9BZ23 570 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 KBTBD4Q9NVX7 518 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 SUCLA2Q9P2R7 463 aaPredicted RBP13.52□□□□□ -0.25
DDX55-210ENST00000543016 ODF2LQ9ULJ1 636 aa13.52□□□□□ -0.25
DDX55-210ENST00000543016 PHLPP2Q6ZVD8 1323 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 A0A087WWV3 80 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 RSPH10B2B2RC85 870 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 USO1O60763 962 aaKnown RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 PRPF40AO75400 957 aaKnown RBP13.51□□□□□ -0.25
DDX55-210ENST00000543016 RSPH10BP0C881 870 aa13.51□□□□□ -0.25
DDX55-210ENST00000543016 CKBP12277 381 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms