RNA–Protein interactions for RNA: ENST00000542848.5

PTPN6-219, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 5

Gene PTPN6, Length 656 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-219	ENST00000542848	COASY	Q13057	564 aa		13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	ADGRD2	Q7Z7M1	963 aa		13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	SKAP1	Q86WV1	359 aa		13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	CKAP2L	Q8IYA6	745 aa		13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	ZNF710	Q8N1W2	664 aa		13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	BICD2	Q8TD16	824 aa		13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	ELAC1	Q9H777	363 aa	Known RBP	13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	TCEAL9	Q9UHQ7	104 aa		13.44	□□□□□ -0.26
PTPN6-219	ENST00000542848	TBKBP1	A7MCY6	615 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	ADAMTS3	O15072	1205 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	PPFIA3	O75145	1194 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	GPR32	O75388	356 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	CSPG5	O95196	566 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	NRIP1	P48552	1158 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	KIZ	Q2M2Z5	673 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	SPOUT1	Q5T280	376 aa	Known RBP	13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	FAM102B	Q5T8I3	360 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	BLOC1S2	Q6QNY1	142 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	FAM228A	Q86W67	206 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	METTL13	Q8N6R0	699 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	BRF1	Q92994	677 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	FAM167A	Q96KS9	214 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	UIMC1	Q96RL1	719 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	OSMR	Q99650	979 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	KCNH6	Q9H252	994 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	ATP6V0A4	Q9HBG4	840 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	TMEM161A	Q9NX61	479 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	CLEC1B	Q9P126	229 aa		13.43	□□□□□ -0.26
PTPN6-219	ENST00000542848	FSD2	A1L4K1	749 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	VTN	P04004	478 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	CPA1	P15085	419 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	IBSP	P21815	317 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	TMOD1	P28289	359 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	HSPA4	P34932	840 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	AKAP17A	Q02040	695 aa	Known RBP	13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	DSC3	Q14574	896 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	NTRK3	Q16288	839 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	PRR16	Q569H4	304 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	PDE12	Q6L8Q7	609 aa	Known RBP	13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	RBM23	Q86U06	439 aa	Known RBP	13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	RNF135	Q8IUD6	432 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	SMRP1	Q8NCR6	262 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	CCDC148	Q8NFR7	591 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	MICAL1	Q8TDZ2	1067 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	JAKMIP1	Q96N16	626 aa	Known RBP	13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	RNF26	Q9BY78	433 aa	Predicted RBP	13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	AGXT2	Q9BYV1	514 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	TLE6	Q9H808	572 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	TLR9	Q9NR96	1032 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	NRBP2	Q9NSY0	501 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	TYW1	Q9NV66	732 aa	Known RBP	13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	GABBR1	Q9UBS5	961 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	SAMM50	Q9Y512	469 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	SNX14	Q9Y5W7	946 aa		13.42	□□□□□ -0.26
PTPN6-219	ENST00000542848	WDR64	B1ANS9	1081 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	HOXA2	O43364	376 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	FGF18	O76093	207 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	USP11	P51784	963 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	EFCAB12	Q6NXP0	572 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	TRMT1L	Q7Z2T5	733 aa	Known RBP	13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	LINC01465	Q8N7H1	131 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	COLGALT1	Q8NBJ5	622 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	PHKB	Q93100	1093 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	LENG9	Q96B70	501 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	MAP7D2	Q96T17	732 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	RIT2	Q99578	217 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	CDCA3	Q99618	268 aa	Predicted RBP	13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	CWH43	Q9H720	699 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	SH3GLB2	Q9NR46	395 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	LZTS1	Q9Y250	596 aa		13.41	□□□□□ -0.26
PTPN6-219	ENST00000542848	LOC730098	B7Z3J9	87 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	FSCN2	O14926	492 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	MSH4	O15457	936 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	GLP2R	O95838	553 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	ZSCAN20	P17040	1043 aa	Predicted RBP	13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	IFNAR1	P17181	557 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	LAG3	P18627	525 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	RPS6KB1	P23443	525 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	EIF4B	P23588	611 aa	Known RBP	13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	PSMA5	P28066	241 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	SFN	P31947	248 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	EVC	P57679	992 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	NLRP11	P59045	1033 aa	Known RBP	13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	ERVFC1	P60507	584 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	PLCB3	Q01970	1234 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	THNSL1	Q8IYQ7	743 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	EDA	Q92838	391 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	MFSD14A	Q96MC6	490 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	PPP1R16B	Q96T49	567 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	TMEM117	Q9H0C3	514 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	ADAMTS10	Q9H324	1103 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	DISC1	Q9NRI5	854 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	PUF60	Q9UHX1	559 aa	Known RBP	13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	MUTYH	Q9UIF7	546 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	AKT3	Q9Y243	479 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	PCDHGC5	Q9Y5F6	944 aa		13.4	□□□□□ -0.26
PTPN6-219	ENST00000542848	PER2	O15055	1255 aa		13.39	□□□□□ -0.27
PTPN6-219	ENST00000542848	EDIL3	O43854	480 aa		13.39	□□□□□ -0.27
PTPN6-219	ENST00000542848	OAT	P04181	439 aa		13.39	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms