RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 GKAP1Q5VSY0 366 aaPredicted RBP12.06□□□□□ -0.48
CDH3-203ENST00000542274 ILDR2Q71H61 639 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 CABP7Q86V35 215 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 EYA3Q99504 573 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 CSRNP2Q9H175 543 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 MKNK2Q9HBH9 465 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 STX8Q9UNK0 236 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 DAGLAQ9Y4D2 1042 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 GRIN2DO15399 1336 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 DLEC1Q9Y238 1755 aa12.06□□□□□ -0.48
CDH3-203ENST00000542274 hCG_2014768A0A024R1R8 64 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 A0A087X0B3 334 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 STXBP3O00186 592 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 PRPF3O43395 683 aaKnown RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 KRT14P02533 472 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 LDHCP07864 332 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 LMOD1P29536 600 aaPredicted RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 STAT6P42226 847 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 AMPD3Q01432 767 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 SBK1Q52WX2 424 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 LMBRD2Q68DH5 695 aaPredicted RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 TYW1BQ6NUM6 668 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 FCHSD1Q86WN1 690 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 RNF25Q96BH1 459 aaPredicted RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 ERP27Q96DN0 273 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 EPSTI1Q96J88 318 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 NAP1L3Q99457 506 aaPredicted RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 SERTAD1Q9UHV2 236 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 A0A1W2PQ67 120 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 CUTAO60888 179 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 ATP6V1G2O95670 118 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 KCNA3P22001 575 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 VARSP26640 1264 aaKnown RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 POLR2FP61218 127 aaKnown RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 TUBA1BP68363 451 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 PICALMQ13492 652 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 NCAPHQ15003 741 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 USH1GQ495M9 461 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 TUBA1AQ71U36 451 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 VPS52Q8N1B4 723 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 GDAP1Q8TB36 358 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 SUCLA2Q9P2R7 463 aaPredicted RBP12.05□□□□□ -0.48
CDH3-203ENST00000542274 BAIAP2L1Q9UHR4 511 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 MAFFQ9ULX9 164 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 PCDHA5Q9Y5H7 936 aa12.05□□□□□ -0.48
CDH3-203ENST00000542274 POTEFA5A3E0 1075 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 PTPREP23469 700 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 KRT2P35908 639 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 ZNF131P52739 623 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 NLRP12P59046 1061 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 SLC44A4Q53GD3 710 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 RILPL1Q5EBL4 403 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 MAATS1Q7Z4T9 603 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 CLEC10AQ8IUN9 316 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 APLFQ8IW19 511 aaPredicted RBP12.04□□□□□ -0.48
CDH3-203ENST00000542274 TTLL6Q8N841 843 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 PNMA1Q8ND90 353 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 IER2Q9BTL4 223 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 FANCGO15287 622 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 PPIP5K2O43314 1243 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 HIP1RO75146 1068 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 POTEIP0CG38 1075 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 GNGT1P63211 74 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 PIK3AP1Q6ZUJ8 805 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 SIX5Q8N196 739 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 GSDMBQ8TAX9 411 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 STAMQ92783 540 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 HSD3B7Q9H2F3 369 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 SNED1Q8TER0 1413 aa12.04□□□□□ -0.48
CDH3-203ENST00000542274 CYTH3O43739 400 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 DDAH1O94760 285 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 TSPY3P0CV98 308 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 TSPY8P0CW00 308 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 RCAN1P53805 252 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 MKRN4PQ13434 485 aaPredicted RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 TMEM151BQ8IW70 566 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 DRC3Q9H069 523 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 ZNF277Q9NRM2 450 aaPredicted RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 ZNF646O15015 1829 aaPredicted RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 GAKO14976 1311 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 TTI1O43156 1089 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 RASA1P20936 1047 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 CACNB3P54284 484 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 PPFIA1Q13136 1202 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 SEPT7Q16181 437 aaKnown RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 GRAMD2AQ8IUY3 354 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 SYT2Q8N9I0 419 aaPredicted RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 SH3TC2Q8TF17 1288 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 SLC16A10Q8TF71 515 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.03□□□□□ -0.48
CDH3-203ENST00000542274 TNFRSF25Q93038 417 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 XPO4Q9C0E2 1151 aaKnown RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 ACTR5Q9H9F9 607 aaPredicted RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 DMAP1Q9NPF5 467 aaPredicted RBP12.03□□□□□ -0.48
CDH3-203ENST00000542274 IFNKQ9P0W0 207 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 FLT1P17948 1338 aa12.03□□□□□ -0.48
CDH3-203ENST00000542274 GOLGA6L10A0A0M3HER8 536 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 PABPN1LA6NDY0 278 aaKnown RBP12.02□□□□□ -0.48
CDH3-203ENST00000542274 DIAPH2O60879 1101 aa12.02□□□□□ -0.48
CDH3-203ENST00000542274 CDC25AP30304 524 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms