RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.38□□□□□ -1.39
PRKDC-209ENST00000540819 TMEM60Q9H2L4 133 aa6.38□□□□□ -1.39
PRKDC-209ENST00000540819 KCNH3Q9ULD8 1083 aa6.38□□□□□ -1.39
PRKDC-209ENST00000540819 CEP131Q9UPN4 1083 aa6.38□□□□□ -1.39
PRKDC-209ENST00000540819 SMG5Q9UPR3 1016 aaKnown RBP6.38□□□□□ -1.39
PRKDC-209ENST00000540819 ASXL2Q76L83 1435 aa6.38□□□□□ -1.39
PRKDC-209ENST00000540819 UBOX5O94941 541 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 HPXP02790 462 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 SCG5P05408 212 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 GLDCP23378 1020 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 GBP1P32455 592 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 IL6STP40189 918 aaPredicted RBP6.37□□□□□ -1.39
PRKDC-209ENST00000540819 KCNJ6P48051 423 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 ACAP2Q15057 778 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 LLGL1Q15334 1064 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 SF1Q15637 639 aaKnown RBP6.37□□□□□ -1.39
PRKDC-209ENST00000540819 CLUL1Q15846 466 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 SPECC1Q5M775 1068 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 SLC35F1Q5T1Q4 408 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 GTF2IRD2BQ6EKJ0 949 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 RETSATQ6NUM9 610 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 CYP26C1Q6V0L0 522 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 USP53Q70EK8 1073 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 BRINP3Q76B58 766 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 MTDHQ86UE4 582 aaKnown RBP6.37□□□□□ -1.39
PRKDC-209ENST00000540819 GTF2IRD2Q86UP8 949 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 MIER2Q8N344 545 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 OXR1Q8N573 874 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 TMEM145Q8NBT3 493 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 CHST14Q8NCH0 376 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 NSUN6Q8TEA1 469 aaKnown RBP6.37□□□□□ -1.39
PRKDC-209ENST00000540819 SSH1Q8WYL5 1049 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 C1orf159Q96HA4 380 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 RIPOR3Q96MK2 946 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 ZFYVE21Q9BQ24 234 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 DUSP15Q9H1R2 295 aaPredicted RBP6.37□□□□□ -1.39
PRKDC-209ENST00000540819 VPS11Q9H270 941 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 SMOC1Q9H4F8 434 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 RETREG1Q9H6L5 497 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 TBC1D22BQ9NU19 505 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 DUSP13Q9UII6 198 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 POLHQ9Y253 713 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 ZNF451Q9Y4E5 1061 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 PCDHGB6Q9Y5F9 930 aa6.37□□□□□ -1.39
PRKDC-209ENST00000540819 WASH4PA8MWX3 477 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 ARVCFO00192 962 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 GOLIM4O00461 696 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 NUAK1O60285 661 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 MAFKO60675 156 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 TUSC2O75896 110 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 BAIAP3O94812 1187 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 KCNH1O95259 989 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 SNRPB2P08579 225 aaKnown RBP6.36□□□□□ -1.39
PRKDC-209ENST00000540819 POU2F2P09086 479 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 IFIT1P09914 478 aaKnown RBP6.36□□□□□ -1.39
PRKDC-209ENST00000540819 MED14OSP0DP75 135 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 MYBP10242 640 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 ITGA4P13612 1032 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 CD247P20963 164 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 PPM1AP35813 382 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 ADKP55263 362 aaKnown RBP6.36□□□□□ -1.39
PRKDC-209ENST00000540819 MPP1Q00013 466 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 EGR3Q06889 387 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 G3BP1Q13283 466 aaKnown RBP eCLIP6.36□□□□□ -1.39
PRKDC-209ENST00000540819 TAF11Q15544 211 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 VPS53Q5VIR6 699 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 BROXQ5VW32 411 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 TTLL10Q6ZVT0 673 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 EFHBQ8N7U6 833 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 ZBTB10Q96DT7 871 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 CCDC74BQ96LY2 380 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 MAP3K14Q99558 947 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 NUP62CLQ9H1M0 184 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 NKX2-4Q9H2Z4 354 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 ALG13Q9NP73 1137 aaKnown RBP6.36□□□□□ -1.39
PRKDC-209ENST00000540819 CD320Q9NPF0 282 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 SMC4Q9NTJ3 1288 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 BLOC1S4Q9NUP1 217 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 RTEL1Q9NZ71 1219 aa6.36□□□□□ -1.39
PRKDC-209ENST00000540819 CGGBP1Q9UFW8 167 aaPredicted RBP6.36□□□□□ -1.39
PRKDC-209ENST00000540819 FAM170AA1A519 330 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 B8ZZF3 427 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 H3BML4 177 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 TMCC2O75069 709 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 H2AFYO75367 372 aaKnown RBP6.35□□□□□ -1.39
PRKDC-209ENST00000540819 TRHRP34981 398 aaPredicted RBP6.35□□□□□ -1.39
PRKDC-209ENST00000540819 GPR3P46089 330 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 MECP2P51608 486 aaKnown RBP6.35□□□□□ -1.39
PRKDC-209ENST00000540819 CACNB3P54284 484 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 SCAND1P57086 179 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 APBA1Q02410 837 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 TMEM177Q53S58 311 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 SPATA1Q5VX52 437 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 ARMC3Q5W041 872 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 C4orf50Q6ZRC1 276 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 ZSCAN30Q86W11 494 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 ZC3H7AQ8IWR0 971 aaKnown RBP6.35□□□□□ -1.39
PRKDC-209ENST00000540819 COLGALT2Q8IYK4 626 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 LILRA2Q8N149 483 aa6.35□□□□□ -1.39
PRKDC-209ENST00000540819 FAM26EQ8N5C1 309 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms