RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PSMC2P35998 433 aaKnown RBP15.1■□□□□ 0.01
RTN3-210ENST00000540798 EPS15P42566 896 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 MAGEA1P43355 309 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 MYBPC2Q14324 1141 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 IKZF4Q9H2S9 585 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 JRKLQ9Y4A0 524 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 KIAA1217Q5T5P2 1943 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 MACROD2A1Z1Q3 448 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 UCHL3P15374 230 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 JAM2P57087 298 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 IRX5P78411 483 aaPredicted RBP15.1■□□□□ 0.01
RTN3-210ENST00000540798 SLC18A3Q16572 532 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 EXOC3L4Q17RC7 722 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 PADI6Q6TGC4 694 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 IRF2BP2Q7Z5L9 587 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 RNF10Q8N5U6 811 aaKnown RBP15.1■□□□□ 0.01
RTN3-210ENST00000540798 ATG4CQ96DT6 458 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 AGPAT3Q9NRZ7 376 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 PCDHB13Q9Y5F0 798 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 DDX39AO00148 427 aaKnown RBP15.1■□□□□ 0.01
RTN3-210ENST00000540798 ACTN1P12814 892 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 QARSP47897 775 aaKnown RBP15.1■□□□□ 0.01
RTN3-210ENST00000540798 RARRES1P49788 294 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 ODR4Q5SWX8 454 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 RNF207Q6ZRF8 634 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 ZNF572Q7Z3I7 529 aaPredicted RBP15.1■□□□□ 0.01
RTN3-210ENST00000540798 KRT222Q8N1A0 295 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 GOLGA5Q8TBA6 731 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 MAF1Q9H063 256 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 MLXIPQ9HAP2 919 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 HOMER2Q9NSB8 354 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 SALL4Q9UJQ4 1053 aa15.1■□□□□ 0.01
RTN3-210ENST00000540798 MYH10P35580 1976 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 ATP2A1O14983 1001 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 TACC1O75410 805 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 TBC1D8O95759 1140 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 EIF2AK2P19525 551 aaKnown RBP15.09■□□□□ 0.01
RTN3-210ENST00000540798 PRKCIP41743 596 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 COG2Q14746 738 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 NOL9Q5SY16 702 aaKnown RBP15.09■□□□□ 0.01
RTN3-210ENST00000540798 GBP6Q6ZN66 633 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 C4orf19Q8IY42 314 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 ZKSCAN4Q969J2 545 aaPredicted RBP15.09■□□□□ 0.01
RTN3-210ENST00000540798 RPGRIP1Q96KN7 1286 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 PNKPQ96T60 521 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 NENFQ9UMX5 172 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 RIPK3Q9Y572 518 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 ATP8B3O60423 1300 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 DSG3P32926 999 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 MCCD1P59942 119 aaPredicted RBP15.09■□□□□ 0.01
RTN3-210ENST00000540798 ALCAMQ13740 583 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 ASIC2Q16515 512 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 ANGEL2Q5VTE6 544 aaKnown RBP15.09■□□□□ 0.01
RTN3-210ENST00000540798 FAM186BQ8IYM0 893 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 NOA1Q8NC60 698 aaKnown RBP15.09■□□□□ 0.01
RTN3-210ENST00000540798 RMDN3Q96TC7 470 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 SENP7Q9BQF6 1050 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 TIPINQ9BVW5 301 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 GBP3Q9H0R5 595 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 ST6GALNAC4Q9H4F1 302 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 SNX12Q9UMY4 172 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 PPP2R3BQ9Y5P8 575 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 A0A0G2JMZ2 1700 aa15.09■□□□□ 0.01
RTN3-210ENST00000540798 PTPRFP10586 1907 aa15.08■□□□□ 0.01
RTN3-210ENST00000540798 C19orf81C9J6K1 198 aa15.08■□□□□ 0.01
RTN3-210ENST00000540798 RAPGEF1Q13905 1077 aa15.08■□□□□ 0.01
RTN3-210ENST00000540798 TDRD12Q587J7 1177 aaKnown RBP15.08■□□□□ 0.01
RTN3-210ENST00000540798 WRNIP1Q96S55 665 aa15.08■□□□□ 0.01
RTN3-210ENST00000540798 MMS19Q96T76 1030 aa15.08■□□□□ 0.01
RTN3-210ENST00000540798 ZNF214Q9UL59 606 aaPredicted RBP15.08■□□□□ 0.01
RTN3-210ENST00000540798 BTNL10A8MVZ5 291 aa15.08■□□□□ 0
RTN3-210ENST00000540798 SEC31AO94979 1220 aaKnown RBP15.08■□□□□ 0
RTN3-210ENST00000540798 MOCS3O95396 460 aa15.08■□□□□ 0
RTN3-210ENST00000540798 ANXA13P27216 316 aa15.08■□□□□ 0
RTN3-210ENST00000540798 JAK3P52333 1124 aa15.08■□□□□ 0
RTN3-210ENST00000540798 CKAP4Q07065 602 aaKnown RBP15.08■□□□□ 0
RTN3-210ENST00000540798 DCAF17Q5H9S7 520 aaPredicted RBP15.08■□□□□ 0
RTN3-210ENST00000540798 KSR1Q8IVT5 923 aa15.08■□□□□ 0
RTN3-210ENST00000540798 FAM133AQ8N9E0 248 aa15.08■□□□□ 0
RTN3-210ENST00000540798 RBM46Q8TBY0 533 aaKnown RBP15.08■□□□□ 0
RTN3-210ENST00000540798 KLRG1Q96E93 195 aa15.08■□□□□ 0
RTN3-210ENST00000540798 UBXN6Q9BZV1 441 aa15.08■□□□□ 0
RTN3-210ENST00000540798 RNF146Q9NTX7 359 aa15.08■□□□□ 0
RTN3-210ENST00000540798 PKD2L1Q9P0L9 805 aa15.08■□□□□ 0
RTN3-210ENST00000540798 BZW2Q9Y6E2 419 aaKnown RBP15.08■□□□□ 0
RTN3-210ENST00000540798 SBF1O95248 1867 aa15.08■□□□□ 0
RTN3-210ENST00000540798 SRGAP2O75044 1071 aa15.08■□□□□ 0
RTN3-210ENST00000540798 ATP9AO75110 1047 aa15.08■□□□□ 0
RTN3-210ENST00000540798 CCNE2O96020 404 aa15.08■□□□□ 0
RTN3-210ENST00000540798 TUBBP07437 444 aa15.08■□□□□ 0
RTN3-210ENST00000540798 SFNP31947 248 aa15.08■□□□□ 0
RTN3-210ENST00000540798 PPP2R5AQ15172 486 aa15.08■□□□□ 0
RTN3-210ENST00000540798 VSIG10LQ86VR7 867 aa15.08■□□□□ 0
RTN3-210ENST00000540798 C12orf56Q8IXR9 622 aa15.08■□□□□ 0
RTN3-210ENST00000540798 RDM1Q8NG50 284 aa15.08■□□□□ 0
RTN3-210ENST00000540798 TRPM4Q8TD43 1214 aa15.08■□□□□ 0
RTN3-210ENST00000540798 PICK1Q9NRD5 415 aa15.08■□□□□ 0
RTN3-210ENST00000540798 PPP1R1BQ9UD71 204 aaPredicted RBP15.08■□□□□ 0
RTN3-210ENST00000540798 AJAP1Q9UKB5 411 aaPredicted RBP15.08■□□□□ 0
RTN3-210ENST00000540798 KLHL30Q0D2K2 578 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms