RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 SORBS3O60504 671 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 MXI1P50539 228 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 PAPD7Q5XG87 772 aaKnown RBP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 FAM76AQ8TAV0 307 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 FAM71BQ8TC56 605 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 NSUN6Q8TEA1 469 aaKnown RBP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 AFAP1L1Q8TED9 768 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 MKNK1Q9BUB5 465 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 RANBP17Q9H2T7 1088 aaKnown RBP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 PLEKHA4Q9H4M7 779 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 SLITRK3O94933 977 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 FECHP22830 423 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 KLHDC7AQ5VTJ3 777 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 SLC30A10Q6XR72 485 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 PBKQ96KB5 322 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 OLFML3Q9NRN5 406 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 SEPT9Q9UHD8 586 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 FHOD1Q9Y613 1164 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 KRIT1O00522 736 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 HNRNPDLO14979 420 aaKnown RBP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 SPOPO43791 374 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 PSAPP07602 524 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 TRIM49P0CI25 452 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 TRIM49CP0CI26 452 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 LIG4P49917 911 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 IRX3P78415 501 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 SLC5A5Q92911 643 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 KRT12Q99456 494 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 DEFB129Q9H1M3 183 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 UBE4BO95155 1302 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 FAM170AA1A519 330 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 TBC1D12O60347 775 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 DRAP1Q14919 205 aaPredicted RBP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 DEPTORQ8TB45 409 aa11.72□□□□□ -0.53
CLIP1-213ENST00000540338 BCCIPQ9P287 314 aaKnown RBP eCLIP11.72□□□□□ -0.53
CLIP1-213ENST00000540338 TARSL2A2RTX5 802 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 SLC16A4O15374 487 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 SPATA31C1P0DKV0 1188 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 DLATP10515 647 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 YWHABP31946 246 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 GMPSP49915 693 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 POLGP54098 1239 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 MFAP3P55082 362 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 GUCY2DQ02846 1103 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 PPP2R5CQ13362 524 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 SEL1L2Q5TEA6 688 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 HAUS6Q7Z4H7 955 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 APOBEC3FQ8IUX4 373 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 SPATA4Q8NEY3 305 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 LRRC15Q8TF66 581 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 COL4A1P02462 1669 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 MYH15Q9Y2K3 1946 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 AKAP3O75969 853 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 HARSP12081 509 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 TNNI1P19237 187 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 MMP14P50281 582 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 TGFB2P61812 414 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 RPS6P62753 249 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 BAATQ14032 418 aaPredicted RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 PPP2R5AQ15172 486 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 CLUL1Q15846 466 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 SAMD7Q7Z3H4 446 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 HNRNPLLQ8WVV9 542 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 INTS2Q9H0H0 1204 aaKnown RBP11.71□□□□□ -0.53
CLIP1-213ENST00000540338 HOXC10Q9NYD6 342 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 MTUS1Q9ULD2 1270 aa11.71□□□□□ -0.53
CLIP1-213ENST00000540338 WNK3Q9BYP7 1800 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 GOLGA8IPA6NC78 632 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 GOLGA8JA6NMD2 632 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 ANXA13P27216 316 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 INPP5BP32019 993 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 FMO5P49326 533 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 CASP4P49662 377 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 VAMP7P51809 220 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 MIS18BP1Q6P0N0 1132 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 MSANTD4Q8NCY6 345 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 NT5C1BQ96P26 610 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 AZI2Q9H6S1 392 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 PLCB1Q9NQ66 1216 aa11.71□□□□□ -0.54
CLIP1-213ENST00000540338 GOLGA6CA6NDK9 693 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 NFIBO00712 420 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 GOLGA6DP0CG33 693 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 RDXP35241 583 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 EPHB4P54760 987 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 SLC7A5Q01650 507 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 MAPK8IP2Q13387 824 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 GLE1Q53GS7 698 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 KSR1Q8IVT5 923 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 TAAR1Q96RJ0 339 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 TIPINQ9BVW5 301 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 GOLGA6AQ9NYA3 693 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 UTP11Q9Y3A2 253 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 REXO2Q9Y3B8 237 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 PCDHA10Q9Y5I2 948 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 COL5A3P25940 1745 aaPredicted RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 ATRNL1Q5VV63 1379 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 EPHB6O15197 1021 aa11.7□□□□□ -0.54
CLIP1-213ENST00000540338 HEXIM1O94992 359 aaKnown RBP11.7□□□□□ -0.54
CLIP1-213ENST00000540338 ABL1P00519 1130 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms