RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 APBB2Q92870 758 aa20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 GUCD1Q96NT3 240 aa20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 ZSWIM4Q9H7M6 989 aa20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 CYP26B1Q9NR63 512 aa20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 MSRAQ9UJ68 235 aa20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 GINS2Q9Y248 185 aa20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 SQORQ9Y6N5 450 aa20.5■□□□□ 0.87
SNRPA1-203ENST00000540017 A0A087WWV3 80 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 DKC1O60832 514 aaKnown RBP eCLIP20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 MAFO75444 373 aaPredicted RBP20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 ARHGEF15O94989 841 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 SPATA31C1P0DKV0 1188 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 YWHABP31946 246 aaKnown RBP20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 TMEM266Q2M3C6 531 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 INTS4Q96HW7 963 aaKnown RBP20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 ZNF668Q96K58 619 aaPredicted RBP20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 ADAMTS10Q9H324 1103 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 CHD7Q9P2D1 2997 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 PADI3Q9ULW8 664 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 AKT3Q9Y243 479 aa20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 NOC2LQ9Y3T9 749 aaKnown RBP20.49■□□□□ 0.87
SNRPA1-203ENST00000540017 NLRP11P59045 1033 aaKnown RBP20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 IL17AQ16552 155 aa20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 FAM117BQ6P1L5 589 aa20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 RTN4RL1Q86UN2 441 aaPredicted RBP20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 LINC01599Q8WXQ3 324 aa20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 CEP170P1Q96L14 293 aa20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 OSMRQ99650 979 aa20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 ZNF576Q9H609 170 aa20.48■□□□□ 0.87
SNRPA1-203ENST00000540017 TMEM265A0A087WTH1 108 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 MED24O75448 989 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 LYPLA2O95372 231 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 TMOD1P28289 359 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 CRYBB1P53674 252 aaPredicted RBP20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 RILPL1Q5EBL4 403 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 CATSPER3Q86XQ3 398 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 MYOCDQ8IZQ8 938 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 USP38Q8NB14 1042 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 NEK9Q8TD19 979 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 MAP7D2Q96T17 732 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 TMX1Q9H3N1 280 aa20.47■□□□□ 0.87
SNRPA1-203ENST00000540017 LCHNA4D1U4 455 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 VPS37CA5D8V6 355 aaPredicted RBP20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 ENPP3O14638 875 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 TLL1O43897 1013 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 GJB5O95377 273 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 AMHP03971 560 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 CA3P07451 260 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 SYT1P21579 422 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 FXR2P51116 673 aaKnown RBP eCLIP20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 GPC3P51654 580 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 PAK2Q13177 524 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 GRIN2CQ14957 1233 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 XKR9Q5GH70 373 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 FERMT3Q86UX7 667 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 PIGOQ8TEQ8 1089 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 DHX33Q9H6R0 707 aaKnown RBP20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 SLC28A3Q9HAS3 691 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 ERVK-5Q9HDB9 667 aa20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 BMP2KQ9NSY1 1161 aaPredicted RBP20.46■□□□□ 0.87
SNRPA1-203ENST00000540017 RPS6KA5O75582 802 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 OTUD6AQ7L8S5 288 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 SPRED2Q7Z698 418 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 FAM228AQ86W67 206 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 TOP1MTQ969P6 601 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 CDX2Q99626 313 aaPredicted RBP20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 ZBED2Q9BTP6 218 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 SUCLA2Q9P2R7 463 aaPredicted RBP20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 ST3GAL5Q9UNP4 418 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 ARID2Q68CP9 1835 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 COL6A3P12111 3177 aa20.45■□□□□ 0.86
SNRPA1-203ENST00000540017 MGEA5O60502 916 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 UPP2O95045 317 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 PDCP20941 246 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 ATP2C1P98194 919 aaPredicted RBP20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 NFX1Q12986 1120 aaKnown RBP20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 ECM1Q16610 540 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 KSR1Q8IVT5 923 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 IGSF22Q8N9C0 903 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 POLR3CQ9BUI4 534 aaPredicted RBP20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 TUFT1Q9NNX1 390 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 ANKEF1Q9NU02 776 aa20.44■□□□□ 0.86
SNRPA1-203ENST00000540017 PP2D1A8MPX8 630 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 CSDE1O75534 798 aaKnown RBP20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 RPA1P27694 616 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 RFC5P40937 340 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 PRPHP41219 470 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 RARRES1P49788 294 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 DNM2P50570 870 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 POLGP54098 1239 aaPredicted RBP20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 TAP1Q03518 808 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 PDIA5Q14554 519 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 EMC2Q15006 297 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 PPP2R2DQ66LE6 453 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 POTEGQ6S5H5 508 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 BRAPQ7Z569 592 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 HSCBQ8IWL3 235 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 SLC7A3Q8WY07 619 aa20.43■□□□□ 0.86
SNRPA1-203ENST00000540017 MYLIPQ8WY64 445 aa20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms