RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 RBM46Q8TBY0 533 aaKnown RBP13.72□□□□□ -0.21
SFSWAP-208ENST00000539506 CABS1Q96KC9 395 aa13.72□□□□□ -0.21
SFSWAP-208ENST00000539506 NAP1L4Q99733 375 aaKnown RBP13.72□□□□□ -0.21
SFSWAP-208ENST00000539506 CELF4Q9BZC1 486 aaKnown RBP13.72□□□□□ -0.21
SFSWAP-208ENST00000539506 HDAC9Q9UKV0 1011 aa13.72□□□□□ -0.21
SFSWAP-208ENST00000539506 TRAF3IP3Q9Y228 551 aa13.72□□□□□ -0.21
SFSWAP-208ENST00000539506 GNA14O95837 355 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 ITGA4P13612 1032 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 HOXA7P31268 230 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 PTK2Q05397 1052 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 ITIH3Q06033 890 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 KNOP1Q1ED39 458 aaKnown RBP13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 EDRF1Q3B7T1 1238 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 SYDE2Q5VT97 1194 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 GBP6Q6ZN66 633 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 CCDC13Q8IYE1 715 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 GMCL1Q96IK5 515 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 PRMT6Q96LA8 375 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 MRIQ9BWK5 157 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 GLT8D2Q9H1C3 349 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 EPN3Q9H201 632 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 BHMT2Q9H2M3 363 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 HAUS2Q9NVX0 235 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 GOLGA6L7A0A1B0GV03 622 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 CHRM1P11229 460 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 SCP2P22307 547 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 ALS2CLQ60I27 953 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 ZNF571Q7Z3V5 609 aaPredicted RBP13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 NOVA2Q9UNW9 492 aaKnown RBP13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 DNM3Q9UQ16 869 aa13.71□□□□□ -0.21
SFSWAP-208ENST00000539506 ASTN1O14525 1302 aa13.71□□□□□ -0.22
SFSWAP-208ENST00000539506 IGLV3-22A0A075B6J6 115 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 MDH1P40925 334 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 ERVK-9P63128 1117 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 IKQ13123 557 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 ARHGAP27Q6ZUM4 889 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 RNF10Q8N5U6 811 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 PIGOQ8TEQ8 1089 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 TBC1D31Q96DN5 1066 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 WDR18Q9BV38 432 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 CNOT8Q9UFF9 292 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 TLDC2A0PJX2 215 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 CETN3O15182 167 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 PON1P27169 355 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 CIITAP33076 1130 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 SETQ01105 290 aaPredicted RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 KLHL30Q0D2K2 578 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 AOC3Q16853 763 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 GJB7Q6PEY0 223 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 B4GALNT4Q76KP1 1039 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 EIF2AK1Q9BQI3 630 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 AMACRQ9UHK6 382 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 SPDYE3A6NKU9 549 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 TBX3O15119 743 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 CLIC2O15247 247 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 UCHL3P15374 230 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 CHRNA5P30532 468 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 CTNNA1P35221 906 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 PAK2Q13177 524 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 PRPF4BQ13523 1007 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 CTTNQ14247 550 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 KSR1Q8IVT5 923 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 PRPF38AQ8NAV1 312 aaKnown RBP13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 ATP6V1G3Q96LB4 118 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 SIX2Q9NPC8 291 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 PRR12Q9ULL5 1215 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 BCS1LQ9Y276 419 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 ATAD5Q96QE3 1844 aa13.7□□□□□ -0.22
SFSWAP-208ENST00000539506 SLX4Q8IY92 1834 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 GRID2IPA4D2P6 1211 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 DNM1LO00429 736 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 BMP3P12645 472 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 HSD17B3P37058 310 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 CNPY4Q8N129 248 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 ACER1Q8TDN7 264 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 ZKSCAN4Q969J2 545 aaPredicted RBP13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 KLC4Q9NSK0 619 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 EIF4E1BA6NMX2 242 aaKnown RBP13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 DAPK3O43293 454 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 RDXP35241 583 aaKnown RBP13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 UBXN2AP68543 259 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 MEI1Q5TIA1 1274 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 PPP4R3CPQ6ZMV5 832 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 CEP89Q96ST8 783 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 NUCKS1Q9H1E3 243 aaKnown RBP13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 YY1AP1Q9H869 796 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 GOPCQ9HD26 462 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 SLC40A1Q9NP59 571 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 WRAP73Q9P2S5 460 aaPredicted RBP13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 ARMCX3Q9UH62 379 aaPredicted RBP13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 SERPINA10Q9UK55 444 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 PCDHGC5Q9Y5F6 944 aa13.69□□□□□ -0.22
SFSWAP-208ENST00000539506 GOLGA6L10A6NI86 522 aa13.68□□□□□ -0.22
SFSWAP-208ENST00000539506 YDJCA8MPS7 323 aa13.68□□□□□ -0.22
SFSWAP-208ENST00000539506 TGFB1I1O43294 461 aa13.68□□□□□ -0.22
SFSWAP-208ENST00000539506 PPP1R12BO60237 982 aaPredicted RBP13.68□□□□□ -0.22
SFSWAP-208ENST00000539506 CDC25CP30307 473 aa13.68□□□□□ -0.22
SFSWAP-208ENST00000539506 SKOR1P84550 965 aa13.68□□□□□ -0.22
SFSWAP-208ENST00000539506 EPHA7Q15375 998 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms