RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 L3MBTL1Q9Y468 752 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 PCDHA13Q9Y5I0 950 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 CARMIL3Q8ND23 1372 aa11.4□□□□□ -0.58
CLIP1-209ENST00000537178 MIF4GDA9UHW6 222 aaKnown RBP11.4□□□□□ -0.59
CLIP1-209ENST00000537178 E9PMD0 336 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 NBPF9Q3BBW0 867 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 SLFN12LQ6IEE8 588 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 ERICH1Q86X53 443 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 TTC13Q8NBP0 860 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 SNX19Q92543 992 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 PAWRQ96IZ0 340 aaKnown RBP11.4□□□□□ -0.59
CLIP1-209ENST00000537178 CYTH2Q99418 400 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 TSC22D3Q99576 134 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 NDST4Q9H3R1 872 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 STOML1Q9UBI4 398 aa11.4□□□□□ -0.59
CLIP1-209ENST00000537178 GYG2O15488 501 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 TJP3O95049 919 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 SERPINB2P05120 415 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 OSBPP22059 807 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 PHKA1P46020 1223 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 FLOT2Q14254 428 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 CC2D2BQ6DHV5 1058 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 TMC4Q7Z404 712 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 TBC1D1Q86TI0 1168 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 VSTM4Q8IW00 320 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 SMYD4Q8IYR2 804 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 GCNAQ96QF7 691 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 TMEM60Q9H2L4 133 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 MAN1B1Q9UKM7 699 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 INTUQ9ULD6 942 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 XDHP47989 1333 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 BMP3P12645 472 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 KIF23Q02241 960 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 MORF4L2Q15014 288 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 LRRC24Q50LG9 513 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 ACAD11Q709F0 780 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 SPICE1Q8N0Z3 855 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 NLGN1Q8N2Q7 840 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 LINC00301Q8NCQ3 95 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 NSUN7Q8NE18 718 aaKnown RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 N4BP2L2Q92802 583 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 HEXIM2Q96MH2 286 aaKnown RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 ABCF3Q9NUQ8 709 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 CIAO1O76071 339 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 CD58P19256 250 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 SUPT20HL1Q3ZLR7 823 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 RASGRP4Q8TDF6 673 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 BTBD6Q96KE9 485 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 NR1H4Q96RI1 486 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 NGRNQ9NPE2 291 aaKnown RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 STAP2Q9UGK3 403 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 SERPINB13Q9UIV8 391 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 PIK3C2AO00443 1686 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 ARHGEF9O43307 516 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 TMCC1O94876 653 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 IFNAR1P17181 557 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 CCND2P30279 289 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 UBXN2AP68543 259 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 RBM41Q96IZ5 413 aaKnown RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 ORAI2Q96SN7 254 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 LSG1Q9H089 658 aaKnown RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 TRIM45Q9H8W5 580 aaPredicted RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 RPF1Q9H9Y2 349 aaKnown RBP11.39□□□□□ -0.59
CLIP1-209ENST00000537178 LCMT1Q9UIC8 334 aa11.39□□□□□ -0.59
CLIP1-209ENST00000537178 COBLO75128 1261 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 ACSL3O95573 720 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 RECQLP46063 649 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 ARPP19P56211 112 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 CACNB1Q02641 598 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 GPR162Q16538 588 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 NBPF10Q6P3W6 841 aaKnown RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 CEP70Q8NHQ1 597 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 ELAC2Q9BQ52 826 aaKnown RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 RGPD8O14715 1765 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 A0A0G2JND7 137 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 PPP1R12AO14974 1030 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 HIPK4Q8NE63 616 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 TTC17Q96AE7 1141 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 LRRC37BQ96QE4 947 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 DDX60Q8IY21 1712 aaKnown RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 MMP1P03956 469 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 PSAPP07602 524 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 PLA2G4BP0C869 781 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 KRT4P19013 534 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 NT5C2P49902 561 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 KRT27Q7Z3Y8 459 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 NUDCD3Q8IVD9 361 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 EXT2Q93063 718 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 ALKBH8Q96BT7 664 aaKnown RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 FAF2Q96CS3 445 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 NEUROG2Q9H2A3 272 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 SPTLC3Q9NUV7 552 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 SFMBT1Q9UHJ3 866 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 SIPA1L3O60292 1781 aaPredicted RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 K7ERI5 159 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 AP5Z1O43299 807 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 LDHAP00338 332 aaKnown RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 CYP27A1Q02318 531 aa11.38□□□□□ -0.59
CLIP1-209ENST00000537178 CAPRIN1Q14444 709 aaKnown RBP11.38□□□□□ -0.59
CLIP1-209ENST00000537178 MTERF2Q49AM1 385 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms