RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 GPATCH2Q9NW75 528 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 PIM2Q9P1W9 311 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 WHRNQ9P202 907 aa7.43□□□□□ -1.22
USP28-202ENST00000535607 RGS17Q9UGC6 210 aaPredicted RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 TNS1Q9HBL0 1735 aaKnown RBP7.43□□□□□ -1.22
USP28-202ENST00000535607 SSU72P8A0A1W2PR75 194 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 DYRK3O43781 588 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 SUSD5O60279 629 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 CLSTN1O94985 981 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 LARGE1O95461 756 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 SERPINC1P01008 464 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 PROCP04070 461 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 SLC3A2P08195 630 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 SNRPA1P09661 255 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 TOP1P11387 765 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 NOP2P46087 812 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 EIF5P55010 431 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 RSPO4Q2I0M5 234 aaPredicted RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 GORABQ5T7V8 394 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 CWF19L1Q69YN2 538 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 ADALQ6DHV7 355 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 POMZP3Q6PJE2 187 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 PPFIBP1Q86W92 1011 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 SUGP1Q8IWZ8 645 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 LRRC47Q8N1G4 583 aaKnown RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 DTWD2Q8NBA8 298 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 NEK11Q8NG66 645 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 FAM71BQ8TC56 605 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 GATA6Q92908 595 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 SMARCE1Q969G3 411 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 ZNF496Q96IT1 587 aaPredicted RBP7.42□□□□□ -1.22
USP28-202ENST00000535607 PGBD1Q96JS3 809 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 CARD6Q9BX69 1037 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 USP44Q9H0E7 712 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 MKNK2Q9HBH9 465 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 ADAM21Q9UKJ8 722 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 JRKLQ9Y4A0 524 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 PALLDQ8WX93 1383 aa7.42□□□□□ -1.22
USP28-202ENST00000535607 KIF1CO43896 1103 aaKnown RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 STX10O60499 249 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 ALDH1L1O75891 902 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 YEATS4O95619 227 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 MAP4K4O95819 1239 aaPredicted RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 APPP05067 770 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 CEACAM5P06731 702 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 EPHX1P07099 455 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 ZNF865P0CJ78 1059 aaPredicted RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 CD247P20963 164 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 SSRP1Q08945 709 aaKnown RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 NMIQ13287 307 aaPredicted RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 MTX1Q13505 466 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 ANKRD39Q53RE8 183 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 NKAPLQ5M9Q1 402 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 CDKAL1Q5VV42 579 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 C11orf57Q6ZUT1 292 aaPredicted RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 C22orf34Q6ZV56 151 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 BRAPQ7Z569 592 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 MICAL1Q8TDZ2 1067 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 KLHL6Q8WZ60 621 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 PIGBQ92521 554 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 BRF1Q92994 677 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 ZNF622Q969S3 477 aaKnown RBP eCLIP7.41□□□□□ -1.22
USP28-202ENST00000535607 SYTL4Q96C24 671 aaPredicted RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 FGD4Q96M96 766 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 NEK1Q96PY6 1258 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 FSD1Q9BTV5 496 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 NAA15Q9BXJ9 866 aaKnown RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 XPO4Q9C0E2 1151 aaKnown RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 IFNKQ9P0W0 207 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 DBF4Q9UBU7 674 aaPredicted RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 SF3B6Q9Y3B4 125 aaKnown RBP7.41□□□□□ -1.22
USP28-202ENST00000535607 MSRB2Q9Y3D2 182 aa7.41□□□□□ -1.22
USP28-202ENST00000535607 A0A087WUV0 522 aaPredicted RBP7.4□□□□□ -1.22
USP28-202ENST00000535607 CCDC196A0A1B0GTZ2 297 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 KIF5CO60282 957 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 PFKFB2O60825 505 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 TBC1D8O95759 1140 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 ITGB2P05107 769 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 UBASH3AP57075 661 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 GNG11P61952 73 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 MYL5Q02045 173 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 PTH1RQ03431 593 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 G3BP1Q13283 466 aaKnown RBP eCLIP7.4□□□□□ -1.22
USP28-202ENST00000535607 RASA3Q14644 834 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 STK38Q15208 465 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 IFI16Q16666 785 aaKnown RBP7.4□□□□□ -1.22
USP28-202ENST00000535607 LONRF2Q1L5Z9 754 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 DNAJC21Q5F1R6 531 aaKnown RBP7.4□□□□□ -1.22
USP28-202ENST00000535607 CCDC70Q6NSX1 233 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 SYNE3Q6ZMZ3 975 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 G2E3Q7L622 706 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 SPATS2Q86XZ4 545 aaKnown RBP7.4□□□□□ -1.22
USP28-202ENST00000535607 FAM181AQ8N9Y4 354 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 SMARCC2Q8TAQ2 1214 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 NETO1Q8TDF5 533 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 ZNF669Q96BR6 464 aaPredicted RBP7.4□□□□□ -1.22
USP28-202ENST00000535607 HEXIM2Q96MH2 286 aaKnown RBP7.4□□□□□ -1.22
USP28-202ENST00000535607 CEP89Q96ST8 783 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 SEMA6BQ9H3T3 888 aa7.4□□□□□ -1.22
USP28-202ENST00000535607 GP6Q9HCN6 339 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms