RNA–Protein interactions for RNA: ENST00000534699.5

CSDE1-217, Transcript of cold shock domain containing E1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CSDE1, Length 2,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-217ENST00000534699 UNC45AQ9H3U1 944 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 PRKAG3Q9UGI9 489 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 TPCN1Q9ULQ1 816 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 SAMM50Q9Y512 469 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 ARID2Q68CP9 1835 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 LCHNA4D1U4 455 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 RAB27AP51159 221 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 PRKCEQ02156 737 aa11.69□□□□□ -0.54
CSDE1-217ENST00000534699 EPOPA6NHQ4 379 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 C9IYK1 514 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 MAFO75444 373 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 BMP1P13497 986 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 CD52P31358 61 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 QARSP47897 775 aaKnown RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 AK2P54819 239 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 BTG3Q14201 252 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 KCTD17Q8N5Z5 321 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 PABPC5Q96DU9 382 aaKnown RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 GCOM2Q9BZD3 368 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 UPF3BQ9BZI7 483 aaKnown RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 FAM49AQ9H0Q0 323 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 ADAMTS10Q9H324 1103 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 AGO3Q9H9G7 860 aaKnown RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 ZSCAN20P17040 1043 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 LAG3P18627 525 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 EIF4BP23588 611 aaKnown RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 TBC1D8BQ0IIM8 1120 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 EFCAB12Q6NXP0 572 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 CNNM3Q8NE01 707 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 CCDC51Q96ER9 411 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 MRPL9Q9BYD2 267 aaKnown RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 TMEM117Q9H0C3 514 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 ANKEF1Q9NU02 776 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 LIMCH1Q9UPQ0 1083 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 KIF3AQ9Y496 699 aa11.68□□□□□ -0.54
CSDE1-217ENST00000534699 ARIH1Q9Y4X5 557 aaPredicted RBP11.68□□□□□ -0.54
CSDE1-217ENST00000534699 DDX39AO00148 427 aaKnown RBP11.67□□□□□ -0.54
CSDE1-217ENST00000534699 STBD1O95210 358 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 PPM1AP35813 382 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 TRAPPC10P48553 1259 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 SAFBQ15424 915 aaKnown RBP eCLIP11.67□□□□□ -0.54
CSDE1-217ENST00000534699 SRGAP1Q7Z6B7 1085 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 LINC01599Q8WXQ3 324 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 TNFRSF25Q93038 417 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 CEP89Q96ST8 783 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 ATP6V0A4Q9HBG4 840 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 DENND3A2RUS2 1198 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 ARHGEF15O94989 841 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 LINC00271P0C7V0 271 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 DARSP14868 501 aaKnown RBP11.67□□□□□ -0.54
CSDE1-217ENST00000534699 AXLP30530 894 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 GPC3P51654 580 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 RTN4RL1Q86UN2 441 aaPredicted RBP11.67□□□□□ -0.54
CSDE1-217ENST00000534699 TMX1Q9H3N1 280 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 VAV3Q9UKW4 847 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 ST3GAL5Q9UNP4 418 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 NOC2LQ9Y3T9 749 aaKnown RBP11.67□□□□□ -0.54
CSDE1-217ENST00000534699 PCDHB12Q9Y5F1 795 aa11.67□□□□□ -0.54
CSDE1-217ENST00000534699 ZNF862O60290 1169 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 SFPQP23246 707 aaKnown RBP eCLIP11.66□□□□□ -0.54
CSDE1-217ENST00000534699 CTNNB1P35222 781 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 IFNLR1Q8IU57 520 aaPredicted RBP11.66□□□□□ -0.54
CSDE1-217ENST00000534699 BANK1Q8NDB2 785 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 NSUN7Q8NE18 718 aaKnown RBP11.66□□□□□ -0.54
CSDE1-217ENST00000534699 RASGRP4Q8TDF6 673 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 C17orf80Q9BSJ5 609 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 ZSWIM4Q9H7M6 989 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 UBE2ZQ9H832 354 aaPredicted RBP11.66□□□□□ -0.54
CSDE1-217ENST00000534699 ATG2AQ2TAZ0 1938 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 CTDNEP1O95476 244 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 PLCB3Q01970 1234 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 FAM228AQ86W67 206 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 ADAMTS19Q8TE59 1207 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 GDPD5Q8WTR4 605 aa11.66□□□□□ -0.54
CSDE1-217ENST00000534699 SLC26A4O43511 780 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 ZNF623O75123 536 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 C1RP00736 705 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 MCM2P49736 904 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 BMS1Q14692 1282 aaKnown RBP11.65□□□□□ -0.54
CSDE1-217ENST00000534699 INF2Q27J81 1249 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 UHRF1Q96T88 793 aaPredicted RBP11.65□□□□□ -0.54
CSDE1-217ENST00000534699 C1QTNF1Q9BXJ1 281 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 NFKBIZQ9BYH8 718 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 FOXP1Q9H334 677 aaPredicted RBP11.65□□□□□ -0.54
CSDE1-217ENST00000534699 UBN1Q9NPG3 1134 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 PRDM6Q9NQX0 595 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 BRCA2P51587 3418 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 PHLPP2Q6ZVD8 1323 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 CNTNAP2Q9UHC6 1331 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 TDP2O95551 362 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 SRGAP2BP0DMP2 458 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 RBM25P49756 843 aaKnown RBP11.65□□□□□ -0.54
CSDE1-217ENST00000534699 GIT2Q14161 759 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 TRAPPC12Q8WVT3 735 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 PGBD4Q96DM1 585 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 ADAM2Q99965 735 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 DHX33Q9H6R0 707 aaKnown RBP11.65□□□□□ -0.54
CSDE1-217ENST00000534699 AKT3Q9Y243 479 aa11.65□□□□□ -0.54
CSDE1-217ENST00000534699 MKI67P46013 3256 aaKnown RBP11.65□□□□□ -0.55
CSDE1-217ENST00000534699 A0A0U1RQF3 1178 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms