RNA–Protein interactions for RNA: ENST00000533078.5

CMTM1-216, Transcript of CKLF like MARVEL transmembrane domain containing 1, humanhuman

TSL 1 (best)

Gene CMTM1, Length 565 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM1-216ENST00000533078 ZNF302Q9NR11 478 aa13.14□□□□□ -0.31
CMTM1-216ENST00000533078 CACNA1HO95180 2353 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 C9IYK1 514 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 ATG7O95352 703 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 ARP10275 920 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 TMOD1P28289 359 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 MTMR3Q13615 1198 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 KIZQ2M2Z5 673 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 TMEM184AQ6ZMB5 413 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 NIPA1Q7RTP0 329 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 KIAA0319LQ8IZA0 1049 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 ZNF710Q8N1W2 664 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 MAP7D2Q96T17 732 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 OSMRQ99650 979 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 ANO3Q9BYT9 981 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 FAM86C1Q9NVL1 165 aa13.13□□□□□ -0.31
CMTM1-216ENST00000533078 KMT2EQ8IZD2 1858 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 EVPLQ92817 2033 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 ZFHX2Q9C0A1 2572 aaPredicted RBP13.12□□□□□ -0.31
CMTM1-216ENST00000533078 MEIS1O00470 390 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 FSCN2O14926 492 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 MGEA5O60502 916 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 FGFR1P11362 822 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 SP100P23497 879 aaPredicted RBP13.12□□□□□ -0.31
CMTM1-216ENST00000533078 PDE4AP27815 886 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 VCPP55072 806 aaKnown RBP13.12□□□□□ -0.31
CMTM1-216ENST00000533078 FOXK2Q01167 660 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 ITIH3Q06033 890 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 APOBRQ0VD83 1088 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 ITGB3BPQ13352 177 aaPredicted RBP13.12□□□□□ -0.31
CMTM1-216ENST00000533078 SMC1AQ14683 1233 aaKnown RBP13.12□□□□□ -0.31
CMTM1-216ENST00000533078 KCNT2Q6UVM3 1135 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 ABHD15Q6UXT9 468 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 RAB11FIP4Q86YS3 637 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 KREMEN2Q8NCW0 462 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 VN1R2Q8NFZ6 395 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 CYP2W1Q8TAV3 490 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 BBXQ8WY36 941 aaPredicted RBP13.12□□□□□ -0.31
CMTM1-216ENST00000533078 ASIC4Q96FT7 647 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 RIPOR3Q96MK2 946 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 SCLT1Q96NL6 688 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 PPP1R16BQ96T49 567 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 APOL5Q9BWW9 433 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 SPG21Q9NZD8 308 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 SORCS3Q9UPU3 1222 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 AKT3Q9Y243 479 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 VPS13AQ96RL7 3174 aa13.12□□□□□ -0.31
CMTM1-216ENST00000533078 IGKV6D-21A0A0A0MT36 114 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 CARNS1A5YM72 827 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 SMCO2A6NFE2 343 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 MAGEB2O15479 319 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 SREBF1P36956 1147 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 MTHFRP42898 656 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 RBM10P98175 930 aaKnown RBP13.11□□□□□ -0.31
CMTM1-216ENST00000533078 SETQ01105 290 aaPredicted RBP13.11□□□□□ -0.31
CMTM1-216ENST00000533078 RNF20Q5VTR2 975 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 WWC2Q6AWC2 1192 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 MCTP2Q6DN12 878 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 SWSAP1Q6NVH7 229 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 FAM228AQ86W67 206 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 PLA2G4DQ86XP0 818 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 CCDC60Q8IWA6 550 aaPredicted RBP13.11□□□□□ -0.31
CMTM1-216ENST00000533078 SMAP1Q8IYB5 467 aaPredicted RBP13.11□□□□□ -0.31
CMTM1-216ENST00000533078 RNF169Q8NCN4 708 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 TMEM40Q8WWA1 233 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 PGBD1Q96JS3 809 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 FAM167AQ96KS9 214 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 MFSD1Q9H3U5 465 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 CWH43Q9H720 699 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 TBC1D22BQ9NU19 505 aa13.11□□□□□ -0.31
CMTM1-216ENST00000533078 MYH9P35579 1960 aaKnown RBP13.11□□□□□ -0.31
CMTM1-216ENST00000533078 SPDYE4A6NLX3 237 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 H0Y858 1186 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 IPO5O00410 1097 aaKnown RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 GALR2O43603 387 aaPredicted RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 VTNP04004 478 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 PSAPP07602 524 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 ALDH7A1P49419 539 aaKnown RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 FAM189BP81408 668 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 RTN1Q16799 776 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 ZNF746Q6NUN9 644 aaPredicted RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 TRMT1LQ7Z2T5 733 aaKnown RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 SGMS1Q86VZ5 419 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 CCDC12Q8WUD4 166 aaPredicted RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 TMEM169Q96HH4 297 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 ZNF577Q9BSK1 485 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 MRPL9Q9BYD2 267 aaKnown RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 LRRC2Q9BYS8 371 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 S1PR5Q9H228 398 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 CDHR5Q9HBB8 845 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 SAMM50Q9Y512 469 aa13.1□□□□□ -0.31
CMTM1-216ENST00000533078 PTPRZ1P23471 2315 aaPredicted RBP13.1□□□□□ -0.31
CMTM1-216ENST00000533078 HIDE1A8MVS5 230 aa13.09□□□□□ -0.31
CMTM1-216ENST00000533078 SLC27A2O14975 620 aa13.09□□□□□ -0.31
CMTM1-216ENST00000533078 ZBTB43O43298 467 aa13.09□□□□□ -0.31
CMTM1-216ENST00000533078 C22orf31O95567 290 aa13.09□□□□□ -0.31
CMTM1-216ENST00000533078 CCNE2O96020 404 aa13.09□□□□□ -0.31
CMTM1-216ENST00000533078 NLRP11P59045 1033 aaKnown RBP13.09□□□□□ -0.31
CMTM1-216ENST00000533078 SYCE2Q6PIF2 218 aa13.09□□□□□ -0.31
CMTM1-216ENST00000533078 PLCD3Q8N3E9 789 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms