RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 DTHD1Q6ZMT9 781 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 USP38Q8NB14 1042 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 IFIH1Q9BYX4 1025 aaKnown RBP22.21■■□□□ 1.15
CPSF1-209ENST00000532725 ADAMTS10Q9H324 1103 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 ANKEF1Q9NU02 776 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 LRWD1Q9UFC0 647 aa22.21■■□□□ 1.15
CPSF1-209ENST00000532725 EFCAB14O75071 495 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 HSP90AA1P07900 732 aaKnown RBP22.2■■□□□ 1.14
CPSF1-209ENST00000532725 ATP2A2P16615 1042 aaKnown RBP22.2■■□□□ 1.14
CPSF1-209ENST00000532725 CRYBB1P53674 252 aaPredicted RBP22.2■■□□□ 1.14
CPSF1-209ENST00000532725 KIZQ2M2Z5 673 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 XKR9Q5GH70 373 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 TSHZ1Q6ZSZ6 1077 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 ZNF710Q8N1W2 664 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 ERMNQ8TAM6 284 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 APBB2Q92870 758 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 MAP7D2Q96T17 732 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 DHX33Q9H6R0 707 aaKnown RBP22.2■■□□□ 1.14
CPSF1-209ENST00000532725 AKT3Q9Y243 479 aa22.2■■□□□ 1.14
CPSF1-209ENST00000532725 NLRP11P59045 1033 aaKnown RBP22.19■■□□□ 1.14
CPSF1-209ENST00000532725 ARL6IP4Q66PJ3 421 aaKnown RBP22.19■■□□□ 1.14
CPSF1-209ENST00000532725 LIN28BQ6ZN17 250 aaKnown RBP eCLIP22.19■■□□□ 1.14
CPSF1-209ENST00000532725 EXOC8Q8IYI6 725 aa22.19■■□□□ 1.14
CPSF1-209ENST00000532725 SPRYD3Q8NCJ5 442 aa22.19■■□□□ 1.14
CPSF1-209ENST00000532725 PIGOQ8TEQ8 1089 aa22.19■■□□□ 1.14
CPSF1-209ENST00000532725 TMEM40Q8WWA1 233 aa22.19■■□□□ 1.14
CPSF1-209ENST00000532725 SLC9A7Q96T83 725 aa22.19■■□□□ 1.14
CPSF1-209ENST00000532725 JPH2Q9BR39 696 aaPredicted RBP22.19■■□□□ 1.14
CPSF1-209ENST00000532725 PBX4Q9BYU1 374 aa22.19■■□□□ 1.14
CPSF1-209ENST00000532725 GINS2Q9Y248 185 aa22.19■■□□□ 1.14
CPSF1-209ENST00000532725 PDIA4P13667 645 aaKnown RBP22.18■■□□□ 1.14
CPSF1-209ENST00000532725 MUTP22033 750 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 CD52P31358 61 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 PBX2P40425 430 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 RFC5P40937 340 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 KCNJ6P48051 423 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 DNM2P50570 870 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 ECM1Q16610 540 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 FAM173BQ6P4H8 233 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 NACC1Q96RE7 527 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 PPP1R16BQ96T49 567 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 RAB34Q9BZG1 259 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 ZSCAN16Q9H4T2 348 aaPredicted RBP22.18■■□□□ 1.14
CPSF1-209ENST00000532725 SUCLA2Q9P2R7 463 aaPredicted RBP22.18■■□□□ 1.14
CPSF1-209ENST00000532725 PADI3Q9ULW8 664 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 NOC2LQ9Y3T9 749 aaKnown RBP22.18■■□□□ 1.14
CPSF1-209ENST00000532725 STK24Q9Y6E0 443 aa22.18■■□□□ 1.14
CPSF1-209ENST00000532725 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.17■■□□□ 1.14
CPSF1-209ENST00000532725 RARRES1P49788 294 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 GPC3P51654 580 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 RABGGTBP53611 331 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 DEFB103AP81534 67 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 CDC42EP1Q00587 391 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 SF3A1Q15459 793 aaKnown RBP22.17■■□□□ 1.14
CPSF1-209ENST00000532725 SLC7A3Q8WY07 619 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 OSMRQ99650 979 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 CLIC4Q9Y696 253 aa22.17■■□□□ 1.14
CPSF1-209ENST00000532725 SIP14410 1827 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 PP2D1A8MPX8 630 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 ENPP3O14638 875 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 BMP15O95972 392 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 CDC25AP30304 524 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 CCT6AP40227 531 aaKnown RBP22.16■■□□□ 1.14
CPSF1-209ENST00000532725 POLGP54098 1239 aaPredicted RBP22.16■■□□□ 1.14
CPSF1-209ENST00000532725 HAUS3Q68CZ6 603 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 POTEGQ6S5H5 508 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 RTN4RL1Q86UN2 441 aaPredicted RBP22.16■■□□□ 1.14
CPSF1-209ENST00000532725 HERC6Q8IVU3 1022 aa22.16■■□□□ 1.14
CPSF1-209ENST00000532725 MMTAG2Q9BU76 263 aaKnown RBP22.16■■□□□ 1.14
CPSF1-209ENST00000532725 DBR1Q9UK59 544 aaKnown RBP22.16■■□□□ 1.14
CPSF1-209ENST00000532725 VWA3AA6NCI4 1184 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 RPS6KA5O75582 802 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 EIF4BP23588 611 aaKnown RBP22.15■■□□□ 1.14
CPSF1-209ENST00000532725 DNAJB2P25686 324 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 PTPAQ15257 358 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 TMCO2Q7Z6W1 182 aaPredicted RBP22.15■■□□□ 1.14
CPSF1-209ENST00000532725 TMEM143Q96AN5 459 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 ZNF668Q96K58 619 aaPredicted RBP22.15■■□□□ 1.14
CPSF1-209ENST00000532725 TMX1Q9H3N1 280 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 ERVK-5Q9HDB9 667 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 XPNPEP1Q9NQW7 623 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 ST3GAL5Q9UNP4 418 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 YBX2Q9Y2T7 364 aaKnown RBP22.15■■□□□ 1.14
CPSF1-209ENST00000532725 PCDHA11Q9Y5I1 949 aa22.15■■□□□ 1.14
CPSF1-209ENST00000532725 DGAT1O75907 488 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 MYOGP15173 224 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 PAK2Q13177 524 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 EMC2Q15006 297 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 RAB30Q15771 203 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 KRT79Q5XKE5 535 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 FAM43BQ6ZT52 329 aaPredicted RBP22.14■■□□□ 1.13
CPSF1-209ENST00000532725 RHPN2Q8IUC4 686 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 KSR1Q8IVT5 923 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 SNX29Q8TEQ0 813 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 PRPF31Q8WWY3 499 aaKnown RBP22.14■■□□□ 1.13
CPSF1-209ENST00000532725 TOP1MTQ969P6 601 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 FTHL17Q9BXU8 183 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 MSRAQ9UJ68 235 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 KIAA1024Q9UPX6 916 aa22.14■■□□□ 1.13
CPSF1-209ENST00000532725 GPR182O15218 404 aa22.13■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms