RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 TRIM13O60858 407 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 CYP1A1P04798 512 aaPredicted RBP5.29□□□□□ -1.56
CD44-233ENST00000531141 POLD1P28340 1107 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 KCNC1P48547 511 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 RGS3P49796 1198 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 BCAR1P56945 870 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 ADCY2Q08462 1091 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 VMACQ2NL98 169 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 IQSEC1Q6DN90 963 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 GRAMD4Q6IC98 578 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 KIAA1841Q6NSI8 718 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 LCNL1Q6ZST4 164 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 FRMD7Q6ZUT3 714 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 FAM124AQ86V42 546 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 RASSF3Q86WH2 238 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 KLHL36Q8N4N3 616 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 TXNDC5Q8NBS9 432 aaKnown RBP5.29□□□□□ -1.56
CD44-233ENST00000531141 FERMT2Q96AC1 680 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 GPATCH3Q96I76 525 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 KRTAP4-11Q9BYQ6 195 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 ZDHHC5Q9C0B5 715 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 WNT8AQ9H1J5 351 aa5.29□□□□□ -1.56
CD44-233ENST00000531141 BARX1Q9HBU1 254 aaPredicted RBP5.29□□□□□ -1.56
CD44-233ENST00000531141 NOP58Q9Y2X3 529 aaKnown RBP5.29□□□□□ -1.56
CD44-233ENST00000531141 hCG_2014768A0A024R1R8 64 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 MAFGO15525 162 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 PRPF6O94906 941 aaKnown RBP5.28□□□□□ -1.56
CD44-233ENST00000531141 ADCY8P40145 1251 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 CDKN1CP49918 316 aaPredicted RBP5.28□□□□□ -1.56
CD44-233ENST00000531141 CD83Q01151 205 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 TOP3AQ13472 1001 aaPredicted RBP5.28□□□□□ -1.56
CD44-233ENST00000531141 RGL3Q3MIN7 710 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 MCTP2Q6DN12 878 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 Q6ZUG5 572 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 LHFPL2Q6ZUX7 228 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 OTOP2Q7RTS6 562 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 KANSL1Q7Z3B3 1105 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 CXorf67Q86X51 503 aaPredicted RBP5.28□□□□□ -1.56
CD44-233ENST00000531141 NUDT10Q8NFP7 164 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 NUDT11Q96G61 164 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 LCORQ96JN0 433 aaPredicted RBP5.28□□□□□ -1.56
CD44-233ENST00000531141 MYL10Q9BUA6 226 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 PITHD1Q9GZP4 211 aaPredicted RBP5.28□□□□□ -1.56
CD44-233ENST00000531141 KATNBL1Q9H079 304 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 KCMF1Q9P0J7 381 aa5.28□□□□□ -1.56
CD44-233ENST00000531141 A0A0G2JNJ9 132 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 MROH6A6NGR9 719 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 ALG1L2C9J202 215 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 K7ESF4 209 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 SASH1O94885 1247 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 HMGCRP04035 888 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 CDK11BP21127 795 aaKnown RBP5.27□□□□□ -1.57
CD44-233ENST00000531141 MOGSQ13724 837 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 ZBTB41Q5SVQ8 909 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 LCE4AQ5TA78 99 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 BORAQ6PGQ7 559 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 BMP8AQ7Z5Y6 402 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 PLEKHH3Q7Z736 793 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 RALYLQ86SE5 291 aaKnown RBP5.27□□□□□ -1.57
CD44-233ENST00000531141 PRPF38AQ8NAV1 312 aaKnown RBP5.27□□□□□ -1.57
CD44-233ENST00000531141 MBD6Q96DN6 1003 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 AJUBAQ96IF1 538 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 ACAP3Q96P50 834 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 KCNC2Q96PR1 638 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 MS4A5Q9H3V2 200 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 Q9UFV3 132 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 ADAM29Q9UKF5 820 aa5.27□□□□□ -1.57
CD44-233ENST00000531141 NOC2LQ9Y3T9 749 aaKnown RBP5.27□□□□□ -1.57
CD44-233ENST00000531141 PRKD3O94806 890 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 APOL3O95236 402 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 CSF2RBP32927 897 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 MANFP55145 182 aaKnown RBP5.26□□□□□ -1.57
CD44-233ENST00000531141 ANAPC15P60006 121 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 KIAA2012Q0VF49 1180 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 USP10Q14694 798 aaKnown RBP5.26□□□□□ -1.57
CD44-233ENST00000531141 EIF4HQ15056 248 aaKnown RBP5.26□□□□□ -1.57
CD44-233ENST00000531141 DGKDQ16760 1214 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 NT5DC1Q5TFE4 455 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 MARCH10Q8NA82 808 aaPredicted RBP5.26□□□□□ -1.57
CD44-233ENST00000531141 COG1Q8WTW3 980 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 ZNF496Q96IT1 587 aaPredicted RBP5.26□□□□□ -1.57
CD44-233ENST00000531141 HAPLN2Q9GZV7 340 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 PUS7LQ9H0K6 701 aaKnown RBP5.26□□□□□ -1.57
CD44-233ENST00000531141 SEMA4AQ9H3S1 761 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 MTG2Q9H4K7 406 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 USP40Q9NVE5 1235 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 POLR3BQ9NW08 1133 aaPredicted RBP5.26□□□□□ -1.57
CD44-233ENST00000531141 DENND2AQ9ULE3 1009 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 PPP2R3BQ9Y5P8 575 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 PHLDB1Q86UU1 1377 aa5.26□□□□□ -1.57
CD44-233ENST00000531141 ELL2O00472 640 aaPredicted RBP5.25□□□□□ -1.57
CD44-233ENST00000531141 NOBOXO60393 691 aa5.25□□□□□ -1.57
CD44-233ENST00000531141 OPHN1O60890 802 aa5.25□□□□□ -1.57
CD44-233ENST00000531141 KCNQ1P51787 676 aa5.25□□□□□ -1.57
CD44-233ENST00000531141 NOLC1Q14978 699 aaKnown RBP eCLIP5.25□□□□□ -1.57
CD44-233ENST00000531141 ZNF827Q17R98 1081 aa5.25□□□□□ -1.57
CD44-233ENST00000531141 ZNF568Q3ZCX4 644 aa5.25□□□□□ -1.57
CD44-233ENST00000531141 AHCYL2Q96HN2 611 aaKnown RBP5.25□□□□□ -1.57
CD44-233ENST00000531141 MENTQ9BUN1 341 aa5.25□□□□□ -1.57
CD44-233ENST00000531141 CARD11Q9BXL7 1154 aa5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms