RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 POP1Q99575 1024 aaKnown RBP12.86□□□□□ -0.35
VPS28-214ENST00000531032 OSMRQ99650 979 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 IGFLR1Q9H665 355 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 TCEAL9Q9UHQ7 104 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 CD207Q9UJ71 328 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 CEP131Q9UPN4 1083 aa12.86□□□□□ -0.35
VPS28-214ENST00000531032 WDR64B1ANS9 1081 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 MAGEB2O15479 319 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 EDIL3O43854 480 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 EYA4O95677 639 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 VTNP04004 478 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 IFNAR1P17181 557 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 NDUFV1P49821 464 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 FAM189BP81408 668 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 AKAP17AQ02040 695 aaKnown RBP12.85□□□□□ -0.35
VPS28-214ENST00000531032 UBE3AQ05086 875 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 DSC3Q14574 896 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 FAM102BQ5T8I3 360 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 METTL13Q8N6R0 699 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 LINC01465Q8N7H1 131 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 CCDC136Q96JN2 1154 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 FAM167AQ96KS9 214 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 PPP1R16BQ96T49 567 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 UPF3BQ9BZI7 483 aaKnown RBP12.85□□□□□ -0.35
VPS28-214ENST00000531032 ELAC1Q9H777 363 aaKnown RBP12.85□□□□□ -0.35
VPS28-214ENST00000531032 TMEM161AQ9NX61 479 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 CLEC1BQ9P126 229 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 GABBR1Q9UBS5 961 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 PCDHB12Q9Y5F1 795 aa12.85□□□□□ -0.35
VPS28-214ENST00000531032 TBKBP1A7MCY6 615 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 ZNF862O60290 1169 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 GLP2RO95838 553 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 IBSPP21815 317 aaPredicted RBP12.84□□□□□ -0.35
VPS28-214ENST00000531032 PSMA5P28066 241 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 PDIA3P30101 505 aaKnown RBP12.84□□□□□ -0.35
VPS28-214ENST00000531032 HOXD11P31277 338 aaPredicted RBP12.84□□□□□ -0.35
VPS28-214ENST00000531032 NRIP1P48552 1158 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 USP11P51784 963 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 CLCN3P51790 818 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 COASYQ13057 564 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 ZNF710Q8N1W2 664 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 SMRP1Q8NCR6 262 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 SLC26A6Q9BXS9 759 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 ADAMTS10Q9H324 1103 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 SH3GLB2Q9NR46 395 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 AAASQ9NRG9 546 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 VPS54Q9P1Q0 977 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 SAMM50Q9Y512 469 aa12.84□□□□□ -0.35
VPS28-214ENST00000531032 MSH4O15457 936 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 PPFIA3O75145 1194 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 REC8O95072 547 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 OATP04181 439 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 FGFR1P11362 822 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 PRKCEQ02156 737 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 CSPP1Q1MSJ5 1256 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 EFCAB12Q6NXP0 572 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 TRMT1LQ7Z2T5 733 aaKnown RBP12.83□□□□□ -0.36
VPS28-214ENST00000531032 COLGALT1Q8NBJ5 622 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 SLC5A5Q92911 643 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 MAP7D2Q96T17 732 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 RIT2Q99578 217 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 CWH43Q9H720 699 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 ATP6V0A4Q9HBG4 840 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 NCOA5Q9HCD5 579 aaKnown RBP12.83□□□□□ -0.36
VPS28-214ENST00000531032 TLR9Q9NR96 1032 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 DISC1Q9NRI5 854 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 TYW1Q9NV66 732 aaKnown RBP12.83□□□□□ -0.36
VPS28-214ENST00000531032 HCSTQ9UBK5 93 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 AKT3Q9Y243 479 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 PCDHGC5Q9Y5F6 944 aa12.83□□□□□ -0.36
VPS28-214ENST00000531032 MUC6Q6W4X9 2439 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 FSD2A1L4K1 749 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 FSCN2O14926 492 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 GAS7O60861 476 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 FGF18O76093 207 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 LAG3P18627 525 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 EIF4BP23588 611 aaKnown RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 TMOD1P28289 359 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 SFNP31947 248 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 JAK3P52333 1124 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 NLRP11P59045 1033 aaKnown RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 CCT2P78371 535 aaKnown RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 UGCGQ16739 394 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 HERC4Q5GLZ8 1057 aaPredicted RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 SPOUT1Q5T280 376 aaKnown RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 PDE12Q6L8Q7 609 aaKnown RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 RBM23Q86U06 439 aaKnown RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 LRRC71Q8N4P6 559 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 CDCA3Q99618 268 aaPredicted RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 TMEM117Q9H0C3 514 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 NRBP2Q9NSY0 501 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 RNF19AQ9NV58 838 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 BARX2Q9UMQ3 279 aaPredicted RBP12.82□□□□□ -0.36
VPS28-214ENST00000531032 LZTS1Q9Y250 596 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 TRIOO75962 3097 aa12.82□□□□□ -0.36
VPS28-214ENST00000531032 M0R2N6 131 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 HOXA2O43364 376 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 EPB41L2O43491 1005 aaKnown RBP12.81□□□□□ -0.36
VPS28-214ENST00000531032 GPC3P51654 580 aa12.81□□□□□ -0.36
VPS28-214ENST00000531032 NLRP5P59047 1200 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms