RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 IKQ13123 557 aaPredicted RBP20.99■□□□□ 0.95
VPS28-213ENST00000530983 PEX26Q7Z412 305 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 DDX42Q86XP3 938 aaKnown RBP eCLIP20.99■□□□□ 0.95
VPS28-213ENST00000530983 KIAA0825Q8IV33 1275 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 PROCA1Q8NCQ7 364 aaPredicted RBP20.99■□□□□ 0.95
VPS28-213ENST00000530983 IDI2Q9BXS1 227 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 DDX47Q9H0S4 455 aaKnown RBP20.99■□□□□ 0.95
VPS28-213ENST00000530983 TMCO5BA8MYB1 307 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 G3V3G9 751 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 NDUFAB1O14561 156 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 GFPT2O94808 682 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 HMGB2P26583 209 aaKnown RBP20.99■□□□□ 0.95
VPS28-213ENST00000530983 LSP1P33241 339 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 DCAF8Q5TAQ9 597 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 SUGP1Q8IWZ8 645 aaKnown RBP20.99■□□□□ 0.95
VPS28-213ENST00000530983 RASGEF1CQ8N431 466 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 PIGOQ8TEQ8 1089 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 DBNDD1Q9H9R9 158 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 TRPC5Q9UL62 973 aaPredicted RBP20.99■□□□□ 0.95
VPS28-213ENST00000530983 INTUQ9ULD6 942 aa20.99■□□□□ 0.95
VPS28-213ENST00000530983 IGLV3-22A0A075B6J6 115 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 ZEB2O60315 1214 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 HSD17B3P37058 310 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 UAP1Q16222 522 aaPredicted RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 CEP85LQ5SZL2 805 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 MAATS1Q7Z4T9 603 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 NT5DC3Q86UY8 548 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 LNX1Q8TBB1 728 aaPredicted RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 U2AF1L4Q8WU68 220 aaKnown RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 NEUROG2Q9H2A3 272 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 SUCLA2Q9P2R7 463 aaPredicted RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 AFF2P51816 1311 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 HMGB1P1B2RPK0 211 aaPredicted RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 CYP3A4P08684 503 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 ITGA4P13612 1032 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 FERP16591 822 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 GAP43P17677 238 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 NMT1P30419 496 aaKnown RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 CTTNQ14247 550 aaKnown RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 SLC30A10Q6XR72 485 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 MMS22LQ6ZRQ5 1243 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 RBBP6Q7Z6E9 1792 aaKnown RBP20.98■□□□□ 0.95
VPS28-213ENST00000530983 DAAM2Q86T65 1068 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 SLC30A5Q8TAD4 765 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 LMBR1Q8WVP7 490 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 HSD17B14Q9BPX1 270 aa20.98■□□□□ 0.95
VPS28-213ENST00000530983 H0YGN5 161 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 KRIT1O00522 736 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 EIF3DO15371 548 aaKnown RBP eCLIP20.97■□□□□ 0.95
VPS28-213ENST00000530983 EVI5O60447 810 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 NPEPPSP55786 919 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 JAG1P78504 1218 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 ITGB3BPQ13352 177 aaPredicted RBP20.97■□□□□ 0.95
VPS28-213ENST00000530983 SLC15A2Q16348 729 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 KCTD19Q17RG1 926 aaPredicted RBP20.97■□□□□ 0.95
VPS28-213ENST00000530983 ABCB5Q2M3G0 1257 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 ZC2HC1CQ53FD0 456 aaPredicted RBP20.97■□□□□ 0.95
VPS28-213ENST00000530983 FAM186BQ8IYM0 893 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 HES6Q96HZ4 224 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 TMBIM4Q9HC24 238 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 NFS1Q9Y697 457 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 SCN9AQ15858 1988 aa20.97■□□□□ 0.95
VPS28-213ENST00000530983 COL11A2P13942 1736 aaPredicted RBP20.97■□□□□ 0.95
VPS28-213ENST00000530983 CCDC188H7C350 402 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 ZNF76P36508 570 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 STAT1P42224 750 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 GALCP54803 685 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 LRIG3Q6UXM1 1119 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 KAT2BQ92831 832 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 F8VZ95 297 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 BMP3P12645 472 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 NPR1P16066 1061 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 PSMC2P35998 433 aaKnown RBP20.96■□□□□ 0.95
VPS28-213ENST00000530983 C1orf186Q6ZWK4 172 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 SYCE1Q8N0S2 351 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 WDR18Q9BV38 432 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 EPN3Q9H201 632 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 AMACRQ9UHK6 382 aa20.96■□□□□ 0.95
VPS28-213ENST00000530983 ZBTB39O15060 712 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 PPP1R37O75864 691 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 SLITRK3O94933 977 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 LIG3P49916 1009 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 RBM5P52756 815 aaKnown RBP eCLIP20.95■□□□□ 0.94
VPS28-213ENST00000530983 COG2Q14746 738 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 NFIL3Q16649 462 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 BTNL9Q6UXG8 535 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 OTOP1Q7RTM1 612 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 GLYCTKQ8IVS8 523 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 MYCT1Q8N699 235 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 MRIQ9BWK5 157 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 OSGEPQ9NPF4 335 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 ZNF646O15015 1829 aaPredicted RBP20.95■□□□□ 0.94
VPS28-213ENST00000530983 PIK3CDO00329 1044 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 FAM13AO94988 1023 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 SOX5P35711 763 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 PODNQ7Z5L7 613 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 KSR1Q8IVT5 923 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 KCTD17Q8N5Z5 321 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 OR2W6PQ8NHA6 318 aa20.95■□□□□ 0.94
VPS28-213ENST00000530983 FIZ1Q96SL8 496 aa20.95■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms