RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 EFCAB12Q6NXP0 572 aa23.12■■□□□ 1.29
CD44-222ENST00000526025 CHAMP1Q96JM3 812 aa23.12■■□□□ 1.29
CD44-222ENST00000526025 ARHGEF35A5YM69 484 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 ITGB8P26012 769 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 THPOP40225 353 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 DNM2P50570 870 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 CDC42EP1Q00587 391 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 EMC2Q15006 297 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 KARSQ15046 597 aaKnown RBP23.11■■□□□ 1.29
CD44-222ENST00000526025 SPECC1Q5M775 1068 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 TRAF7Q6Q0C0 670 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 SHC4Q6S5L8 630 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 USP49Q70CQ1 688 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 LRRC8DQ7L1W4 858 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 METTL13Q8N6R0 699 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 DNAJB3Q8WWF6 145 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 TCP11Q8WWU5 503 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 MAP7D2Q96T17 732 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 BHMT2Q9H2M3 363 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 ATP6V0A4Q9HBG4 840 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 KCND2Q9NZV8 630 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 STK17AQ9UEE5 414 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 ZMYND8Q9ULU4 1186 aaPredicted RBP23.11■■□□□ 1.29
CD44-222ENST00000526025 SCN5AQ14524 2016 aa23.11■■□□□ 1.29
CD44-222ENST00000526025 IQCF3P0C7M6 154 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 PLCG1P19174 1290 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 CYP2C18P33260 490 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 MRPS6P82932 125 aaKnown RBP23.1■■□□□ 1.29
CD44-222ENST00000526025 CSPP1Q1MSJ5 1256 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 ZNF618Q5T7W0 954 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 IER5Q5VY09 327 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 RESP18Q5W5W9 173 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 CCDC73Q6ZRK6 1079 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 KCNK18Q7Z418 384 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 TMEM199Q8N511 208 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 MCPH1Q8NEM0 835 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 RASSF8Q8NHQ8 419 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 ZBTB10Q96DT7 871 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 MTRQ99707 1265 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 SH2D3AQ9BRG2 576 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 PPP1R12CQ9BZL4 782 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 FAM49AQ9H0Q0 323 aaPredicted RBP23.1■■□□□ 1.29
CD44-222ENST00000526025 WNT8AQ9H1J5 351 aa23.1■■□□□ 1.29
CD44-222ENST00000526025 A0A1W2PQ27 194 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 A0A1W2PQ64 194 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 A0A1W2PQD8 194 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 E9PMD0 336 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 SYN1P17600 705 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 CMA1P23946 247 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 MGAT3Q09327 533 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 MKRN4PQ13434 485 aaPredicted RBP23.09■■□□□ 1.29
CD44-222ENST00000526025 ZRSR1Q15695 479 aaKnown RBP23.09■■□□□ 1.29
CD44-222ENST00000526025 PADI6Q6TGC4 694 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 FAM43BQ6ZT52 329 aaPredicted RBP23.09■■□□□ 1.29
CD44-222ENST00000526025 SYT2Q8N9I0 419 aaPredicted RBP23.09■■□□□ 1.29
CD44-222ENST00000526025 PYM1Q9BRP8 204 aaKnown RBP23.09■■□□□ 1.29
CD44-222ENST00000526025 SUGCTQ9HAC7 445 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 XPNPEP1Q9NQW7 623 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 BLOC1S4Q9NUP1 217 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 FAM13BQ9NYF5 915 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 SQORQ9Y6N5 450 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 MYH11P35749 1972 aa23.09■■□□□ 1.29
CD44-222ENST00000526025 UMODL1Q5DID0 1318 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 RSPH10B2B2RC85 870 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 H0YGN5 161 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 M0QZ92 97 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 PFKMP08237 780 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 RSPH10BP0C881 870 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 CYP11B2P19099 503 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 CLCN3P51790 818 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 RRAGBQ5VZM2 374 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 LRRC71Q8N4P6 559 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 RAD54LQ92698 747 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 LBHD1Q9BQE6 289 aaPredicted RBP23.08■■□□□ 1.29
CD44-222ENST00000526025 TIPINQ9BVW5 301 aa23.08■■□□□ 1.29
CD44-222ENST00000526025 A0A087WWV3 80 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 FAM237AA0A1B0GTK4 181 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 ASAP2O43150 1006 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 PLA2G4BP0C869 781 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 SLC12A3P55017 1021 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 PPIGQ13427 754 aaKnown RBP eCLIP23.07■■□□□ 1.28
CD44-222ENST00000526025 CLEC17AQ6ZS10 378 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 PSPC1Q8WXF1 523 aaKnown RBP23.07■■□□□ 1.28
CD44-222ENST00000526025 CUEDC2Q9H467 287 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 TRPV2Q9Y5S1 764 aa23.07■■□□□ 1.28
CD44-222ENST00000526025 TET1Q8NFU7 2136 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 USO1O60763 962 aaKnown RBP23.06■■□□□ 1.28
CD44-222ENST00000526025 CHRNA1P02708 482 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 CXCL10P02778 98 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 FPGSQ05932 587 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 MXD4Q14582 209 aaPredicted RBP23.06■■□□□ 1.28
CD44-222ENST00000526025 NAALADL2Q58DX5 795 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 ZNF410Q86VK4 478 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 USP38Q8NB14 1042 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 LRRC15Q8TF66 581 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 LARP4BQ92615 738 aaKnown RBP23.06■■□□□ 1.28
CD44-222ENST00000526025 BADQ92934 168 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 PLIN2Q99541 437 aa23.06■■□□□ 1.28
CD44-222ENST00000526025 CELF4Q9BZC1 486 aaKnown RBP23.06■■□□□ 1.28
CD44-222ENST00000526025 SUCLA2Q9P2R7 463 aaPredicted RBP23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms