RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 FUKQ8N0W3 1084 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 FOXRED1Q96CU9 486 aaPredicted RBP3.49□□□□□ -1.85
CD44-216ENST00000525293 RNPC3Q96LT9 517 aaKnown RBP3.49□□□□□ -1.85
CD44-216ENST00000525293 TMPRSS5Q9H3S3 457 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 PUF60Q9UHX1 559 aaKnown RBP3.49□□□□□ -1.85
CD44-216ENST00000525293 MAGEL2Q9UJ55 1249 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 FAM184BQ9ULE4 1060 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 OAZ3Q9UMX2 235 aa3.49□□□□□ -1.85
CD44-216ENST00000525293 RFPL3O75679 317 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 FLT3P36888 993 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 RGS3P49796 1198 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 ZXDAP98168 799 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 SLC6A3Q01959 620 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 NFYCQ13952 458 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 ZNF174Q15697 407 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 SPDYAQ5MJ70 313 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 OR14K1Q8NGZ2 314 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 OR14A2Q96R54 314 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 FOXB1Q99853 325 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 PLA2G12BQ9BX93 195 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 CHMP4AQ9BY43 222 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 OR10A2Q9H208 303 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 SEMA4AQ9H3S1 761 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 PCIF1Q9H4Z3 704 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 ACSS2Q9NR19 701 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 B4GALT6Q9UBX8 382 aa3.48□□□□□ -1.85
CD44-216ENST00000525293 UBA6A0AVT1 1052 aaPredicted RBP3.47□□□□□ -1.85
CD44-216ENST00000525293 H7C1D1 291 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 CBX4O00257 560 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 RAD17O75943 681 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 PRLP01236 227 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 AMHP03971 560 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 CYP17A1P05093 508 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 SLC9A1P19634 815 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 COMTP21964 271 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 PTX3P26022 381 aaPredicted RBP3.47□□□□□ -1.85
CD44-216ENST00000525293 FNTBP49356 437 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 ANTXR2P58335 489 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 MAP3K12Q12852 859 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 ADAM15Q13444 863 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 R3HDM1Q15032 1099 aaKnown RBP3.47□□□□□ -1.85
CD44-216ENST00000525293 BCL6BQ8N143 479 aaPredicted RBP3.47□□□□□ -1.85
CD44-216ENST00000525293 KIAA1958Q8N8K9 716 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 CFHR4Q92496 578 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 E2F7Q96AV8 911 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 C16orf92Q96LL3 132 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 TUBGCP5Q96RT8 1024 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 ADOQ96SZ5 270 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 TESMINQ9Y4I5 508 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 CD2APQ9Y5K6 639 aa3.47□□□□□ -1.85
CD44-216ENST00000525293 FSHBP01225 129 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 ACO1P21399 889 aaKnown RBP3.46□□□□□ -1.86
CD44-216ENST00000525293 NEK4P51957 841 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 ROM1Q03395 351 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 HGFACQ04756 655 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 DUSP8Q13202 625 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 ACAP1Q15027 740 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 PRKD1Q15139 912 aaPredicted RBP3.46□□□□□ -1.86
CD44-216ENST00000525293 TCEA2Q15560 299 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 TTC38Q5R3I4 469 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 SLFN12LQ6IEE8 588 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 Q6ZSN1 163 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 POLNQ7Z5Q5 900 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 HOMER1Q86YM7 354 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 GPR135Q8IZ08 494 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 NXPE1Q8N323 547 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 SYNPOQ8N3V7 929 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 APPBP2Q92624 585 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 MAML3Q96JK9 1138 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 ELF4Q99607 663 aaPredicted RBP3.46□□□□□ -1.86
CD44-216ENST00000525293 INTS7Q9NVH2 962 aaKnown RBP3.46□□□□□ -1.86
CD44-216ENST00000525293 FANCLQ9NW38 375 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 H2AFY2Q9P0M6 372 aaPredicted RBP3.46□□□□□ -1.86
CD44-216ENST00000525293 SAE1Q9UBE0 346 aaPredicted RBP3.46□□□□□ -1.86
CD44-216ENST00000525293 MAGEC2Q9UBF1 373 aaPredicted RBP3.46□□□□□ -1.86
CD44-216ENST00000525293 ZKSCAN5Q9Y2L8 839 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 SLC30A1Q9Y6M5 507 aa3.46□□□□□ -1.86
CD44-216ENST00000525293 KPNA6O60684 536 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 H2AFYO75367 372 aaKnown RBP3.45□□□□□ -1.86
CD44-216ENST00000525293 MAFO75444 373 aaPredicted RBP3.45□□□□□ -1.86
CD44-216ENST00000525293 C6P13671 934 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 ATP2A2P16615 1042 aaKnown RBP3.45□□□□□ -1.86
CD44-216ENST00000525293 RPS19P39019 145 aaKnown RBP3.45□□□□□ -1.86
CD44-216ENST00000525293 STAT3P40763 770 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 ATP2C1P98194 919 aaPredicted RBP3.45□□□□□ -1.86
CD44-216ENST00000525293 FOXL1Q12952 345 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 EPHA7Q15375 998 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 DGKDQ16760 1214 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 TKFCQ3LXA3 575 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 PRAMEF9Q5VWM5 478 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 CNNM4Q6P4Q7 775 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 KLHDC10Q6PID8 442 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 C16orf86Q6ZW13 317 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 SHCBP1Q8NEM2 672 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 EDAQ92838 391 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 TMEM176AQ96HP8 235 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 ZNF747Q9BV97 191 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 VPS11Q9H270 941 aa3.45□□□□□ -1.86
CD44-216ENST00000525293 AGO3Q9H9G7 860 aaKnown RBP3.45□□□□□ -1.86
CD44-216ENST00000525293 TOMM22Q9NS69 142 aa3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms