RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 NPAS4Q8IUM7 802 aa33.39■■■□□ 2.94
SYNPO-203ENST00000518872 CEP89Q96ST8 783 aa33.39■■■□□ 2.94
SYNPO-203ENST00000518872 GINS2Q9Y248 185 aa33.39■■■□□ 2.94
SYNPO-203ENST00000518872 GPR182O15218 404 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 DGKIO75912 1065 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 VTNP04004 478 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 CLCN3P51790 818 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 PSMC5P62195 406 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 TRIM29Q14134 588 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 KIZQ2M2Z5 673 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 KRT40Q6A162 431 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 MICALL1Q8N3F8 863 aa33.38■■■□□ 2.93
SYNPO-203ENST00000518872 ZSCAN31Q96LW9 406 aaPredicted RBP33.38■■■□□ 2.93
SYNPO-203ENST00000518872 NCOR1O75376 2440 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 FAM205CA6NFA0 338 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 EML1O00423 815 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 LINC00271P0C7V0 271 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 TBC1D8BQ0IIM8 1120 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 TMEM266Q2M3C6 531 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 TJAP1Q5JTD0 557 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 TMEM192Q8IY95 271 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 DIS3L2Q8IYB7 885 aaKnown RBP33.37■■■□□ 2.93
SYNPO-203ENST00000518872 SLFN12Q8IYM2 578 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 FIBCD1Q8N539 461 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 RWDD3Q9Y3V2 267 aa33.37■■■□□ 2.93
SYNPO-203ENST00000518872 IGKV6-21A0A0C4DH24 114 aa33.36■■■□□ 2.93
SYNPO-203ENST00000518872 BTBD18B2RXH4 712 aa33.36■■■□□ 2.93
SYNPO-203ENST00000518872 DKC1O60832 514 aaKnown RBP eCLIP33.36■■■□□ 2.93
SYNPO-203ENST00000518872 STAG3L1P0CL83 205 aa33.36■■■□□ 2.93
SYNPO-203ENST00000518872 NFX1Q12986 1120 aaKnown RBP33.36■■■□□ 2.93
SYNPO-203ENST00000518872 POTEDQ86YR6 584 aa33.36■■■□□ 2.93
SYNPO-203ENST00000518872 SYMPKQ92797 1274 aaKnown RBP33.36■■■□□ 2.93
SYNPO-203ENST00000518872 CLP1Q92989 425 aaKnown RBP33.36■■■□□ 2.93
SYNPO-203ENST00000518872 OSMRQ99650 979 aa33.36■■■□□ 2.93
SYNPO-203ENST00000518872 ADAMTS10Q9H324 1103 aa33.36■■■□□ 2.93
SYNPO-203ENST00000518872 SH2B1Q9NRF2 756 aaPredicted RBP33.36■■■□□ 2.93
SYNPO-203ENST00000518872 SEPT9Q9UHD8 586 aaPredicted RBP33.36■■■□□ 2.93
SYNPO-203ENST00000518872 ST3GAL5Q9UNP4 418 aa33.36■■■□□ 2.93
SYNPO-203ENST00000518872 C5orf67F2Z3F1 127 aa33.35■■■□□ 2.93
SYNPO-203ENST00000518872 H3BNC9 293 aa33.35■■■□□ 2.93
SYNPO-203ENST00000518872 FAM228AQ86W67 206 aa33.35■■■□□ 2.93
SYNPO-203ENST00000518872 LRRC71Q8N4P6 559 aa33.35■■■□□ 2.93
SYNPO-203ENST00000518872 C1orf112Q9NSG2 853 aa33.35■■■□□ 2.93
SYNPO-203ENST00000518872 RNF216Q9NWF9 866 aaPredicted RBP33.35■■■□□ 2.93
SYNPO-203ENST00000518872 AKT3Q9Y243 479 aa33.35■■■□□ 2.93
SYNPO-203ENST00000518872 QARSP47897 775 aaKnown RBP33.34■■■□□ 2.93
SYNPO-203ENST00000518872 SARSP49591 514 aaKnown RBP33.34■■■□□ 2.93
SYNPO-203ENST00000518872 NLRP11P59045 1033 aaKnown RBP33.34■■■□□ 2.93
SYNPO-203ENST00000518872 SPIRE1Q08AE8 756 aa33.34■■■□□ 2.93
SYNPO-203ENST00000518872 CCDC83Q8IWF9 413 aa33.34■■■□□ 2.93
SYNPO-203ENST00000518872 BANK1Q8NDB2 785 aa33.34■■■□□ 2.93
SYNPO-203ENST00000518872 IL27Q8NEV9 243 aa33.34■■■□□ 2.93
SYNPO-203ENST00000518872 RGS18Q9NS28 235 aa33.34■■■□□ 2.93
SYNPO-203ENST00000518872 BAG4O95429 457 aaKnown RBP33.33■■■□□ 2.93
SYNPO-203ENST00000518872 RB1P06400 928 aa33.33■■■□□ 2.93
SYNPO-203ENST00000518872 P4HBP07237 508 aaKnown RBP33.33■■■□□ 2.93
SYNPO-203ENST00000518872 CDC42EP1Q00587 391 aa33.33■■■□□ 2.93
SYNPO-203ENST00000518872 EPHA7Q15375 998 aa33.33■■■□□ 2.93
SYNPO-203ENST00000518872 CMTR2Q8IYT2 770 aaKnown RBP33.33■■■□□ 2.93
SYNPO-203ENST00000518872 PPME1Q9Y570 386 aa33.33■■■□□ 2.93
SYNPO-203ENST00000518872 MGEA5O60502 916 aa33.32■■■□□ 2.92
SYNPO-203ENST00000518872 EIF4BP23588 611 aaKnown RBP33.32■■■□□ 2.92
SYNPO-203ENST00000518872 GPC3P51654 580 aa33.32■■■□□ 2.92
SYNPO-203ENST00000518872 MRPS5P82675 430 aaKnown RBP33.32■■■□□ 2.92
SYNPO-203ENST00000518872 HMGN5P82970 282 aaKnown RBP33.32■■■□□ 2.92
SYNPO-203ENST00000518872 MTERF2Q49AM1 385 aa33.32■■■□□ 2.92
SYNPO-203ENST00000518872 FNDC1Q4ZHG4 1894 aaPredicted RBP33.32■■■□□ 2.92
SYNPO-203ENST00000518872 ANO5Q75V66 913 aa33.32■■■□□ 2.92
SYNPO-203ENST00000518872 ASB2Q96Q27 587 aa33.32■■■□□ 2.92
SYNPO-203ENST00000518872 SPTBN5Q9NRC6 3674 aaKnown RBP33.32■■■□□ 2.92
SYNPO-203ENST00000518872 COG5Q9UP83 839 aa33.32■■■□□ 2.92
SYNPO-203ENST00000518872 KIAA1671Q9BY89 1806 aa33.31■■■□□ 2.92
SYNPO-203ENST00000518872 MAFO75444 373 aaPredicted RBP33.31■■■□□ 2.92
SYNPO-203ENST00000518872 BTG3Q14201 252 aaPredicted RBP33.31■■■□□ 2.92
SYNPO-203ENST00000518872 SLC24A5Q71RS6 500 aa33.31■■■□□ 2.92
SYNPO-203ENST00000518872 MRPL38Q96DV4 380 aaKnown RBP33.31■■■□□ 2.92
SYNPO-203ENST00000518872 PPP1R16BQ96T49 567 aa33.31■■■□□ 2.92
SYNPO-203ENST00000518872 ADAM2Q99965 735 aa33.31■■■□□ 2.92
SYNPO-203ENST00000518872 JPH2Q9BR39 696 aaPredicted RBP33.31■■■□□ 2.92
SYNPO-203ENST00000518872 C9IYK1 514 aa33.3■■■□□ 2.92
SYNPO-203ENST00000518872 MARCH6O60337 910 aa33.3■■■□□ 2.92
SYNPO-203ENST00000518872 BMPR1AP36894 532 aa33.3■■■□□ 2.92
SYNPO-203ENST00000518872 DSC3Q14574 896 aa33.3■■■□□ 2.92
SYNPO-203ENST00000518872 PTPROQ16827 1216 aa33.3■■■□□ 2.92
SYNPO-203ENST00000518872 C4orf19Q8IY42 314 aa33.3■■■□□ 2.92
SYNPO-203ENST00000518872 MYO7AQ13402 2215 aa33.29■■■□□ 2.92
SYNPO-203ENST00000518872 DENND3A2RUS2 1198 aa33.29■■■□□ 2.92
SYNPO-203ENST00000518872 TMEM150BA6NC51 233 aa33.29■■■□□ 2.92
SYNPO-203ENST00000518872 DDX11L8A8MPP1 907 aa33.29■■■□□ 2.92
SYNPO-203ENST00000518872 GPM6BQ13491 265 aa33.29■■■□□ 2.92
SYNPO-203ENST00000518872 SAFBQ15424 915 aaKnown RBP eCLIP33.29■■■□□ 2.92
SYNPO-203ENST00000518872 ARID2Q68CP9 1835 aa33.28■■■□□ 2.92
SYNPO-203ENST00000518872 DARSP14868 501 aaKnown RBP33.28■■■□□ 2.92
SYNPO-203ENST00000518872 DNM2P50570 870 aa33.28■■■□□ 2.92
SYNPO-203ENST00000518872 FAM189BP81408 668 aa33.28■■■□□ 2.92
SYNPO-203ENST00000518872 RABEP1Q15276 862 aa33.28■■■□□ 2.92
SYNPO-203ENST00000518872 SKIV2LQ15477 1246 aaKnown RBP33.28■■■□□ 2.92
SYNPO-203ENST00000518872 AAK1Q2M2I8 961 aa33.28■■■□□ 2.92
SYNPO-203ENST00000518872 C8orf76Q96K31 380 aa33.28■■■□□ 2.92
SYNPO-203ENST00000518872 C11orf84Q9BUA3 381 aaPredicted RBP33.28■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms