RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 TMX3Q96JJ7 454 aa12.92□□□□□ -0.34
VCAN-212ENST00000515397 FAM167AQ96KS9 214 aa12.92□□□□□ -0.34
VCAN-212ENST00000515397 FAM20AQ96MK3 541 aa12.92□□□□□ -0.34
VCAN-212ENST00000515397 TBC1D32Q96NH3 1257 aa12.92□□□□□ -0.34
VCAN-212ENST00000515397 YME1L1Q96TA2 773 aa12.92□□□□□ -0.34
VCAN-212ENST00000515397 LLPHQ9BRT6 129 aaKnown RBP12.92□□□□□ -0.34
VCAN-212ENST00000515397 MYH9P35579 1960 aaKnown RBP12.91□□□□□ -0.34
VCAN-212ENST00000515397 MAGEB2O15479 319 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 RPS6KA5O75582 802 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 BAG4O95429 457 aaKnown RBP12.91□□□□□ -0.34
VCAN-212ENST00000515397 GATMP50440 423 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 PSMC5P62195 406 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 TBC1D8BQ0IIM8 1120 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 GRB10Q13322 594 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 TARBP2Q15633 366 aaKnown RBP12.91□□□□□ -0.34
VCAN-212ENST00000515397 LINC01465Q8N7H1 131 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 FBXO18Q8NFZ0 1043 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 RDM1Q8NG50 284 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 CEP89Q96ST8 783 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 ADAMTS10Q9H324 1103 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 ST3GAL5Q9UNP4 418 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 INSL6Q9Y581 213 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 GTF3C3Q9Y5Q9 886 aa12.91□□□□□ -0.34
VCAN-212ENST00000515397 ST18O60284 1047 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 QARSP47897 775 aaKnown RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 CRYBB1P53674 252 aaPredicted RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 HMGN5P82970 282 aaKnown RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 HTRA4P83105 476 aaPredicted RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 SPIRE1Q08AE8 756 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 GNL2Q13823 731 aaKnown RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 EPHA7Q15375 998 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 FAM228AQ86W67 206 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 KSR1Q8IVT5 923 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 TPH2Q8IWU9 490 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 TGS1Q96RS0 853 aaKnown RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 NAP1L4Q99733 375 aaKnown RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 NIFKQ9BYG3 293 aaKnown RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 TTC12Q9H892 705 aaPredicted RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 ERVK-5Q9HDB9 667 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 PCDHA12Q9UN75 941 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 CEP131Q9UPN4 1083 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 MTCH2Q9Y6C9 303 aa12.9□□□□□ -0.34
VCAN-212ENST00000515397 SPTBN5Q9NRC6 3674 aaKnown RBP12.9□□□□□ -0.34
VCAN-212ENST00000515397 TBX3O15119 743 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 NEMFO60524 1076 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 LPXNO60711 386 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 SLITRK3O94933 977 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 CSPG5O95196 566 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 P4HBP07237 508 aaKnown RBP12.89□□□□□ -0.35
VCAN-212ENST00000515397 TMOD1P28289 359 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 ERVK-21P61565 698 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 PAN2Q504Q3 1202 aaKnown RBP12.89□□□□□ -0.35
VCAN-212ENST00000515397 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.89□□□□□ -0.35
VCAN-212ENST00000515397 SLFN12Q8IYM2 578 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 NLRP7Q8WX94 980 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 CEP170P1Q96L14 293 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 SCLT1Q96NL6 688 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 MTMR9Q96QG7 549 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 MAP7D2Q96T17 732 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 ADAM2Q99965 735 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 EIF2AK1Q9BQI3 630 aaKnown RBP12.89□□□□□ -0.35
VCAN-212ENST00000515397 LXNQ9BS40 222 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 MICAL3Q7RTP6 2002 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 MYO7AQ13402 2215 aa12.89□□□□□ -0.35
VCAN-212ENST00000515397 KDM3AQ9Y4C1 1321 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 SIP14410 1827 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 DENND3A2RUS2 1198 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 POTEMA6NI47 508 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 GJB2P29033 226 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 GPC3P51654 580 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 SKIV2LQ15477 1246 aaKnown RBP12.88□□□□□ -0.35
VCAN-212ENST00000515397 MCTP1Q6DN14 999 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 RHPN2Q8IUC4 686 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 TMEM143Q96AN5 459 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 BACH2Q9BYV9 841 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 TSPYL2Q9H2G4 693 aaPredicted RBP12.88□□□□□ -0.35
VCAN-212ENST00000515397 FOXP1Q9H334 677 aaPredicted RBP12.88□□□□□ -0.35
VCAN-212ENST00000515397 CYP26B1Q9NR63 512 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 SUCLA2Q9P2R7 463 aaPredicted RBP12.88□□□□□ -0.35
VCAN-212ENST00000515397 SQORQ9Y6N5 450 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 CUL9Q8IWT3 2517 aa12.88□□□□□ -0.35
VCAN-212ENST00000515397 UNC80Q8N2C7 3258 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 A0A087WZ62 844 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 GPR182O15218 404 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 RPLP2P05387 115 aaKnown RBP12.87□□□□□ -0.35
VCAN-212ENST00000515397 YWHABP31946 246 aaKnown RBP12.87□□□□□ -0.35
VCAN-212ENST00000515397 TECP42680 631 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 EPC2Q52LR7 807 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 XKR9Q5GH70 373 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 TTC38Q5R3I4 469 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 FAM102BQ5T8I3 360 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 NOSTRINQ8IVI9 506 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 FIBCD1Q8N539 461 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 FBXO22Q8NEZ5 403 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 SP7Q8TDD2 431 aaPredicted RBP12.87□□□□□ -0.35
VCAN-212ENST00000515397 PIGOQ8TEQ8 1089 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 NLRP4Q96MN2 994 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 FDXACB1Q9BRP7 624 aaPredicted RBP12.87□□□□□ -0.35
VCAN-212ENST00000515397 LOXHD1Q8IVV2 1947 aa12.87□□□□□ -0.35
VCAN-212ENST00000515397 IGKV6-21A0A0C4DH24 114 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms