RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 YEATS4O95619 227 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 CTSHP09668 335 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 ACRP10323 421 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 UBA7P41226 1012 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 RARRES1P49788 294 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 POLGP54098 1239 aaPredicted RBP15.91■□□□□ 0.14
NUP54-216ENST00000514901 EPHB4P54760 987 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 MGAT3Q09327 533 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 GPNMBQ14956 572 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 HYIQ5T013 277 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 ZNF365Q70YC5 407 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 C16orf59Q7L2K0 433 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 KRI1Q8N9T8 703 aaKnown RBP15.91■□□□□ 0.14
NUP54-216ENST00000514901 LINC00301Q8NCQ3 95 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 PIGOQ8TEQ8 1089 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 TCP11Q8WWU5 503 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 HERVK_113Q902F9 699 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 TFIP11Q9UBB9 837 aaKnown RBP15.91■□□□□ 0.14
NUP54-216ENST00000514901 KIAA1024Q9UPX6 916 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 AKT3Q9Y243 479 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 CDY2AQ9Y6F7 541 aa15.91■□□□□ 0.14
NUP54-216ENST00000514901 ZBTB39O15060 712 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 SPTLC2O15270 562 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 EFCAB14O75071 495 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 PPP6R2O75170 966 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 MARCKSP29966 332 aaPredicted RBP15.9■□□□□ 0.14
NUP54-216ENST00000514901 CDC25AP30304 524 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 CLCN3P51790 818 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 MBTPS1Q14703 1052 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 SHHQ15465 462 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 ODR4Q5SWX8 454 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 CNKSR3Q6P9H4 555 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 POTEGQ6S5H5 508 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 LRRC71Q8N4P6 559 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 SEPT8Q92599 483 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 VWCEQ96DN2 955 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 CALML4Q96GE6 196 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 CDK5RAP3Q96JB5 506 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.9■□□□□ 0.14
NUP54-216ENST00000514901 SH2D3AQ9BRG2 576 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 MMTAG2Q9BU76 263 aaKnown RBP15.9■□□□□ 0.14
NUP54-216ENST00000514901 DDX19AQ9NUU7 478 aaKnown RBP15.9■□□□□ 0.14
NUP54-216ENST00000514901 PCDH10Q9P2E7 1040 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 SUCLA2Q9P2R7 463 aaPredicted RBP15.9■□□□□ 0.14
NUP54-216ENST00000514901 FBXO2Q9UK22 296 aaPredicted RBP15.9■□□□□ 0.14
NUP54-216ENST00000514901 ZDHHC9Q9Y397 364 aa15.9■□□□□ 0.14
NUP54-216ENST00000514901 TET1Q8NFU7 2136 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 ARHGEF35A5YM69 484 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 PP2D1A8MPX8 630 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 ASAP2O43150 1006 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 BAIAP3O94812 1187 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 CRYBB1P53674 252 aaPredicted RBP15.89■□□□□ 0.13
NUP54-216ENST00000514901 TMEM62Q0P6H9 643 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 EMC2Q15006 297 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 ECM1Q16610 540 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 PLEKHG4Q58EX7 1191 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 FBXO47Q5MNV8 452 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 CABP7Q86V35 215 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 ZNF579Q8NAF0 562 aaKnown RBP15.89■□□□□ 0.13
NUP54-216ENST00000514901 KCNG4Q8TDN1 519 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 APBB2Q92870 758 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 RNPC3Q96LT9 517 aaKnown RBP15.89■□□□□ 0.13
NUP54-216ENST00000514901 MTRQ99707 1265 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 CCSER1Q9C0I3 900 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 ATP6V0A4Q9HBG4 840 aa15.89■□□□□ 0.13
NUP54-216ENST00000514901 TANC1Q9C0D5 1861 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 ABHD14A-ACY1A0A1B0GW23 586 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 GPR32O75388 356 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 EYA4O95677 639 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 VTNP04004 478 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 TXLNAP40222 546 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 NLRP11P59045 1033 aaKnown RBP15.88■□□□□ 0.13
NUP54-216ENST00000514901 MKRN4PQ13434 485 aaPredicted RBP15.88■□□□□ 0.13
NUP54-216ENST00000514901 IKBKEQ14164 716 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 ZRSR1Q15695 479 aaKnown RBP15.88■□□□□ 0.13
NUP54-216ENST00000514901 C9orf50Q5SZB4 431 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 TSHZ1Q6ZSZ6 1077 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 MCPH1Q8NEM0 835 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 PSPC1Q8WXF1 523 aaKnown RBP15.88■□□□□ 0.13
NUP54-216ENST00000514901 CSRNP2Q9H175 543 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 SCN5AQ14524 2016 aa15.88■□□□□ 0.13
NUP54-216ENST00000514901 A0A087WWV3 80 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 GHRP10912 638 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 CYP11B2P19099 503 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 DDIT3P35638 169 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 GPC3P51654 580 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 KRT85P78386 507 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 DNM1Q05193 864 aaKnown RBP15.87■□□□□ 0.13
NUP54-216ENST00000514901 GRIN1Q05586 938 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 MXD4Q14582 209 aaPredicted RBP15.87■□□□□ 0.13
NUP54-216ENST00000514901 LPIN1Q14693 890 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 KIZQ2M2Z5 673 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 LRIT3Q3SXY7 679 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 FOXD4L6Q3SYB3 417 aaPredicted RBP15.87■□□□□ 0.13
NUP54-216ENST00000514901 RASIP1Q5U651 963 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 PADI6Q6TGC4 694 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 FOXD4L3Q6VB84 417 aaPredicted RBP15.87■□□□□ 0.13
NUP54-216ENST00000514901 OTOP2Q7RTS6 562 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 ZNF410Q86VK4 478 aa15.87■□□□□ 0.13
NUP54-216ENST00000514901 DBF4BQ8NFT6 615 aa15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms