RNA–Protein interactions for RNA: ENST00000513578.5

RNF4-220, Transcript of ring finger protein 4, humanhuman

TSL 4

Gene RNF4, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-220ENST00000513578 MAFBQ9Y5Q3 323 aaPredicted RBP9.22□□□□□ -0.93
RNF4-220ENST00000513578 MCM3APO60318 1980 aa9.22□□□□□ -0.93
RNF4-220ENST00000513578 IGSF9BQ9UPX0 1349 aa9.22□□□□□ -0.93
RNF4-220ENST00000513578 ZMYM2Q9UBW7 1377 aa9.22□□□□□ -0.93
RNF4-220ENST00000513578 ZNF236Q9UL36 1845 aa9.21□□□□□ -0.93
RNF4-220ENST00000513578 RNF225M0QZC1 329 aaPredicted RBP9.21□□□□□ -0.94
RNF4-220ENST00000513578 KIF3CO14782 793 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 MAPK13O15264 365 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 NR3C1P04150 777 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 SUPT20HL2P0C7V6 817 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 ZBTB48P10074 688 aaPredicted RBP9.21□□□□□ -0.94
RNF4-220ENST00000513578 ERCC3P19447 782 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 NR2F2P24468 414 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 NMT1P30419 496 aaKnown RBP9.21□□□□□ -0.94
RNF4-220ENST00000513578 GCLCP48506 637 aaPredicted RBP9.21□□□□□ -0.94
RNF4-220ENST00000513578 GTF2A2P52657 109 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 NCKAP1LP55160 1127 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 ACTR2P61160 394 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 GTF2BQ00403 316 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 CNTN2Q02246 1040 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 GOLGA8FQ08AF8 430 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 GOLGA8DPQ0D2H9 430 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 NEDD9Q14511 834 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 UGCGQ16739 394 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 CCDC40Q4G0X9 1142 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 XKR3Q5GH77 459 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 ODR4Q5SWX8 454 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 ZNF662Q6ZS27 426 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 CREBRFQ8IUR6 639 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 ABRAQ8N0Z2 381 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 ZNF397Q8NF99 534 aaPredicted RBP9.21□□□□□ -0.94
RNF4-220ENST00000513578 CPLX3Q8WVH0 158 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 SPIRE2Q8WWL2 714 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 KIFAP3Q92845 792 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 BORCS6Q96GS4 357 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 MS4A4AQ96JQ5 239 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 NTPCRQ9BSD7 190 aaKnown RBP9.21□□□□□ -0.94
RNF4-220ENST00000513578 NUCKS1Q9H1E3 243 aaKnown RBP9.21□□□□□ -0.94
RNF4-220ENST00000513578 MORF4L1Q9UBU8 362 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 PPP2R2CQ9Y2T4 447 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 DAAM1Q9Y4D1 1078 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 SYNGAP1Q96PV0 1343 aa9.21□□□□□ -0.94
RNF4-220ENST00000513578 GTPBP10A4D1E9 387 aaKnown RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 SFI1A8K8P3 1242 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 BACH1O14867 736 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 ZNF862O60290 1169 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 DGAT1O75907 488 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 CCDC175P0C221 793 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 GTF2F1P35269 517 aaKnown RBP eCLIP9.2□□□□□ -0.94
RNF4-220ENST00000513578 PSMC2P35998 433 aaKnown RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 ETF1P62495 437 aaKnown RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 ERVK-9P63128 1117 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 ERVK-24P63145 666 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 CCNA1P78396 465 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 ENPEPQ07075 957 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 KCNMA1Q12791 1236 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 KCTD2Q14681 263 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 PPP2R5AQ15172 486 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 TSR1Q2NL82 804 aaKnown RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 Q3C1V9 767 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 XKR9Q5GH70 373 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 RAD9BQ6WBX8 426 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 ANO5Q75V66 913 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 HS2ST1Q7LGA3 356 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 CCDC170Q8IYT3 715 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 MCPH1Q8NEM0 835 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 AFAP1L1Q8TED9 768 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 SYN2Q92777 582 aaPredicted RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 FGD4Q96M96 766 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 ACCSQ96QU6 501 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 MMP19Q99542 508 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 PAGR1Q9BTK6 254 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 NIFKQ9BYG3 293 aaKnown RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 GBP3Q9H0R5 595 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 GBA2Q9HCG7 927 aaPredicted RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 TXNRD2Q9NNW7 524 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 PLCB1Q9NQ66 1216 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 GABBR1Q9UBS5 961 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 ARMCX3Q9UH62 379 aaPredicted RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 FBXL5Q9UKA1 691 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 PLAGL2Q9UPG8 496 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 CLEC11AQ9Y240 323 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 R3HCC1Q9Y3T6 440 aaKnown RBP9.2□□□□□ -0.94
RNF4-220ENST00000513578 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.2□□□□□ -0.94
RNF4-220ENST00000513578 ADGRG1Q9Y653 693 aa9.2□□□□□ -0.94
RNF4-220ENST00000513578 ASB14A6NK59 587 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 H0YCG3 227 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 NKRFO15226 690 aaKnown RBP eCLIP9.19□□□□□ -0.94
RNF4-220ENST00000513578 STRNO43815 780 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 AKAP3O75969 853 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 FARP2O94887 1054 aaPredicted RBP9.19□□□□□ -0.94
RNF4-220ENST00000513578 AFPP02771 609 aaKnown RBP9.19□□□□□ -0.94
RNF4-220ENST00000513578 EPB41P11171 864 aaKnown RBP9.19□□□□□ -0.94
RNF4-220ENST00000513578 TRIM21P19474 475 aaKnown RBP9.19□□□□□ -0.94
RNF4-220ENST00000513578 SP2Q02086 613 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 MAP1SQ66K74 1059 aaPredicted RBP9.19□□□□□ -0.94
RNF4-220ENST00000513578 SWSAP1Q6NVH7 229 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 TRIM65Q6PJ69 517 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 WDR59Q6PJI9 974 aa9.19□□□□□ -0.94
RNF4-220ENST00000513578 METTL7BQ6UX53 244 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms