RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 LIG4P49917 911 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 CACNB3P54284 484 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 GALCP54803 685 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 TMED2Q15363 201 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PTGISQ16647 500 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 CCDC38Q502W7 563 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 INTS5Q6P9B9 1019 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 C16orf86Q6ZW13 317 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PARP9Q8IXQ6 854 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PALM2Q8IXS6 379 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 TRIM51Q9BSJ1 452 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 INTS2Q9H0H0 1204 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 DBNDD1Q9H9R9 158 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 SERPINA10Q9UK55 444 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 GOLGA8IPA6NC78 632 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 GOLGA8JA6NMD2 632 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 FTLP02792 175 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 TRIM49P0CI25 452 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 TRIM49CP0CI26 452 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 GCLMP48507 274 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 GPSM2P81274 684 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 ZNF543Q08ER8 600 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 BFSP1Q12934 665 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 DLGAP5Q15398 846 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 MEA1Q16626 185 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 EDRF1Q3B7T1 1238 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 RPUSD2Q8IZ73 545 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 CSRNP1Q96S65 589 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 COA1Q9GZY4 146 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 CCPG1Q9ULG6 757 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 ABCB11O95342 1321 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 RIMBP3CA6NJZ7 1639 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 RIMBP3BA6NNM3 1639 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 RIMBP3Q9UFD9 1639 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 CHRNA3P32297 505 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PBX1P40424 430 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 NBPF9Q3BBW0 867 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 KDM7AQ6ZMT4 941 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 DYDC2Q96IM9 177 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PLEKHG2Q9H7P9 1386 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 RIC1Q4ADV7 1423 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 ESYT2A0FGR8 921 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 HNRNPDLO14979 420 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 ZBED4O75132 1171 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PHBP35232 272 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 STAT2P52630 851 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 BPIFB4P59827 614 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 HDLBPQ00341 1268 aaKnown RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 ZNF746Q6NUN9 644 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PPP1R21Q6ZMI0 780 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 TAB3Q8N5C8 712 aaPredicted RBP9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 RSAD2Q8WXG1 361 aa9.07□□□□□ -0.96
LIMCH1-216ENST00000512820 PHF20L1A8MW92 1017 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 H0YIN7 160 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 FAM107AO95990 144 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 HNRNPH1P31943 449 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 DRP2Q13474 957 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 ARHGAP24Q8N264 748 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 KIAA0895Q8NCT3 520 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 SREK1Q8WXA9 508 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 ARHGEF1Q92888 912 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 CYFIP2Q96F07 1278 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 USP21Q9UK80 565 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 RNF225M0QZC1 329 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 PDE2AO00408 941 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 GLI1P08151 1106 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 HSD17B3P37058 310 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 BYSLQ13895 437 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 MUM1Q2TAK8 710 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 CREG2Q8IUH2 290 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 SLC35G2Q8TBE7 412 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 MTMR8Q96EF0 704 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 TSNARE1Q96NA8 513 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 EIF2AK1Q9BQI3 630 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 REEP2Q9BRK0 252 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 TMOD4Q9NZQ9 345 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 TXNDC16Q9P2K2 825 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 I3L4J1 428 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 ANXA13P27216 316 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 SMARCA1P28370 1054 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 NMT1P30419 496 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 PDE6BP35913 854 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 LMNB2Q03252 620 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 KLHDC7AQ5VTJ3 777 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 CCDC137Q6PK04 289 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 RNF207Q6ZRF8 634 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 TMEM179Q6ZVK1 233 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 ZNF507Q8TCN5 953 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 AENQ8WTP8 325 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 TRIM11Q96F44 468 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 CALR3Q96L12 384 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 PACSIN1Q9BY11 444 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 CELF4Q9BZC1 486 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 MLXIPLQ9NP71 852 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 RGL1Q9NZL6 768 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 WNT7AO00755 349 aa9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 SYF2O95926 243 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 VEGFAP15692 232 aaPredicted RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 DHX34Q14147 1143 aaKnown RBP9.06□□□□□ -0.96
LIMCH1-216ENST00000512820 AGBL2Q5U5Z8 902 aa9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms