RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 TGFBRAP1Q8WUH2 860 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 HDAC7Q8WUI4 952 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 CFAP36Q96G28 342 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 NAPBQ9H115 298 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 USP40Q9NVE5 1235 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 NOL12Q9UGY1 213 aaKnown RBP eCLIP10.64□□□□□ -0.71
USP53-207ENST00000510852 EIF2B4Q9UI10 523 aaKnown RBP10.64□□□□□ -0.71
USP53-207ENST00000510852 LUC7L2Q9Y383 392 aaKnown RBP10.64□□□□□ -0.71
USP53-207ENST00000510852 SNX14Q9Y5W7 946 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 SBF1O95248 1867 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 DCAF8L1A6NGE4 600 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 EIF3FO00303 357 aaPredicted RBP10.64□□□□□ -0.71
USP53-207ENST00000510852 CYP21A2P08686 494 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 ITKQ08881 620 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 SPATS2Q86XZ4 545 aaKnown RBP10.64□□□□□ -0.71
USP53-207ENST00000510852 CCDC116Q8IYX3 515 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 SLC7A5P1Q8MH63 180 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 GPC2Q8N158 579 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 NSUN6Q8TEA1 469 aaKnown RBP10.64□□□□□ -0.71
USP53-207ENST00000510852 DPF2Q92785 391 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 SH3GL1Q99961 368 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 DCP1AQ9NPI6 582 aaPredicted RBP10.64□□□□□ -0.71
USP53-207ENST00000510852 TSR3Q9UJK0 312 aaKnown RBP10.64□□□□□ -0.71
USP53-207ENST00000510852 TAF6LQ9Y6J9 622 aa10.64□□□□□ -0.71
USP53-207ENST00000510852 ZMYM6O95789 1325 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 A0A1B0GVC2 190 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 PPP1R12BO60237 982 aaPredicted RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 TNFRSF21O75509 655 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 ZKSCAN1P17029 563 aaPredicted RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 NOP2P46087 812 aaKnown RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 HAND2P61296 217 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 IRX1P78414 480 aaPredicted RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 PLCB3Q01970 1234 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 GRM3Q14832 879 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 IMMTQ16891 758 aaKnown RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 BNC2Q6ZN30 1099 aaPredicted RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 MFSD6Q6ZSS7 791 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 CCDC80Q76M96 950 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 IPMKQ8NFU5 416 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 HIC2Q96JB3 615 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 PRMT6Q96LA8 375 aaPredicted RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 TEX13BQ9BXU2 312 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 ADAMTS1Q9UHI8 967 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 LRRC72A6NJI9 287 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 H0YC42 278 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 ZNF213O14771 459 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 MT-ND3P03897 115 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 CHKAP35790 457 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 SLC12A2P55011 1212 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 CCDC173Q0VFZ6 552 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 DLGAP5Q15398 846 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 POMZP3Q6PJE2 187 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 LHFPL2Q6ZUX7 228 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 MAPKAPK5Q8IW41 473 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 TRIM42Q8IWZ5 723 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 MICALL2Q8IY33 904 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 ZNF540Q8NDQ6 660 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 SYMPKQ92797 1274 aaKnown RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 MYOZ2Q9NPC6 264 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 KIAA1468Q9P260 1216 aa10.63□□□□□ -0.71
USP53-207ENST00000510852 CNOT7Q9UIV1 285 aaKnown RBP10.63□□□□□ -0.71
USP53-207ENST00000510852 DICER1Q9UPY3 1922 aaKnown RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 ADAMTSL1Q8N6G6 1762 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 NCAM2O15394 837 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 BAG2O95816 211 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 KCNH2Q12809 1159 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 TSGA10IPQ3SY00 556 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 C2orf27AQ580R0 203 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 KIAA0319Q5VV43 1072 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 RNF135Q8IUD6 432 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 AFAP1L2Q8N4X5 818 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 CNDP1Q96KN2 507 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 TTPALQ9BTX7 342 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 NKIRAS2Q9NYR9 191 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 HECAQ9UBI9 543 aaPredicted RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 PLAAQ9Y263 795 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 GPR182O15218 404 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 DDNO94850 711 aaPredicted RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 GNRH1P01148 92 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 DNTTP04053 509 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 CYP11B2P19099 503 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 MNX1P50219 401 aaPredicted RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 SLC6A19Q695T7 634 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 USP51Q70EK9 711 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 LINC00469Q8N7U9 141 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 DHTKD1Q96HY7 919 aaPredicted RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 RADILQ96JH8 1075 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 NTPCRQ9BSD7 190 aaKnown RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 TDRD3Q9H7E2 651 aaKnown RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 NPDC1Q9NQX5 325 aaPredicted RBP10.62□□□□□ -0.71
USP53-207ENST00000510852 MCM9Q9NXL9 1143 aa10.62□□□□□ -0.71
USP53-207ENST00000510852 FLT1P17948 1338 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 CYP2D7A0A087X1C5 515 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 MINDY4BA8MYZ0 360 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 ABLIM3O94929 683 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 CACNB3P54284 484 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 ADCY2Q08462 1091 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 NFIAQ12857 509 aa10.61□□□□□ -0.71
USP53-207ENST00000510852 SMAD4Q13485 552 aaKnown RBP10.61□□□□□ -0.71
USP53-207ENST00000510852 RABEP1Q15276 862 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms