RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 HAUS7Q99871 368 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 USP26Q9BXU7 913 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 EPN3Q9H201 632 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TMEM245Q9H330 911 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 GGNBP2Q9H3C7 697 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MMADHCQ9H3L0 296 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 EHD1Q9H4M9 534 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PICK1Q9NRD5 415 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 C20orf96Q9NUD7 363 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 ZNF215Q9UL58 517 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 WDR3Q9UNX4 943 aaKnown RBP eCLIP3.82□□□□□ -1.8
USP53-205ENST00000509769 TNKSO95271 1327 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 H3BRJ5 948 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ZNF263O14978 683 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SEMA3EO15041 775 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 RGS5O15539 181 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 LZTS3O60299 673 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 PRMT3O60678 531 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CTNND1O60716 968 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 GGPS1O95749 300 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 LMOD1P29536 600 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 DDIT3P35638 169 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MAGEA1P43355 309 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MRPL12P52815 198 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 ABCE1P61221 599 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 LRMPQ12912 555 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 THOC5Q13769 683 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 C16orf72Q14CZ0 275 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MAPK11Q15759 364 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 HADHQ16836 314 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 ABCB5Q2M3G0 1257 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 C8orf34Q49A92 452 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 AASDHQ4L235 1098 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 SLC27A3Q5K4L6 730 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 WASHC2DQ5SRD0 308 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TYW1BQ6NUM6 668 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CC2D1AQ6P1N0 951 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 ELMSAN1Q6PJG2 1045 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 GPR141Q7Z602 305 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PCGF5Q86SE9 256 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 EGFL6Q8IUX8 553 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TRIM59Q8IWR1 403 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PPWD1Q96BP3 646 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 S100PBPQ96BU1 408 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PPP1R36Q96LQ0 422 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PACSIN1Q9BY11 444 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 DACT1Q9NYF0 836 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ASIC3Q9UHC3 531 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ENOPH1Q9UHY7 261 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PNMA2Q9UL42 364 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 PCDHGA3Q9Y5H0 932 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TRIM64A6NGJ6 449 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TRIM64BA6NI03 449 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 KRT1P04264 644 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 FCGR1AP12314 374 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TNFAIP3P21580 790 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MCM7P33993 719 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 FLT3P36888 993 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 STAT6P42226 847 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 RXRGP48443 463 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 BFSP1Q12934 665 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TMEM63BQ5T3F8 832 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ZNF530Q6P9A1 599 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 SYCE2Q6PIF2 218 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 C16orf89Q6UX73 402 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CATIPQ7Z7H3 387 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 NLRP14Q86W24 1093 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CRLF3Q8IUI8 442 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TCP11L2Q8N4U5 519 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 OR8K1Q8NGG5 319 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 HNRNPLLQ8WVV9 542 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 TP53INP1Q96A56 240 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CIDECQ96AQ7 238 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 TADA1Q96BN2 335 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 TMX3Q96JJ7 454 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 FAM161BQ96MY7 647 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CUEDC2Q9H467 287 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 XPO5Q9HAV4 1204 aaKnown RBP eCLIP3.82□□□□□ -1.8
USP53-205ENST00000509769 TBCCD1Q9NVR7 557 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CORO1CQ9ULV4 474 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 PPP2R2CQ9Y2T4 447 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 NUP188Q5SRE5 1749 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 KPNA7A9QM74 516 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 DNALI1O14645 258 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 SKAP2O75563 359 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 MED26O95402 600 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 BCRP11274 1271 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CPA1P15085 419 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ANXA13P27216 316 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ZNF76P36508 570 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 MMP14P50281 582 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 DNM2P50570 870 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ADARP55265 1226 aaKnown RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 SLFN5Q08AF3 891 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ZC2HC1CQ53FD0 456 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 SULT1C3Q6IMI6 304 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 ZYG11AQ6WRX3 759 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 CCDC149Q6ZUS6 474 aa3.82□□□□□ -1.8
USP53-205ENST00000509769 SYDE1Q6ZW31 735 aaPredicted RBP3.82□□□□□ -1.8
USP53-205ENST00000509769 YTHDF3Q7Z739 585 aaKnown RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms