RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 LARP4BQ92615 738 aaKnown RBP32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 DHX58Q96C10 678 aa32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 HPSEQ9Y251 543 aa32.97■■■□□ 2.87
LIMCH1-211ENST00000509638 POLR2DO15514 142 aaKnown RBP32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 MAFO75444 373 aaPredicted RBP32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 DGAT1O75907 488 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 E2F4Q16254 413 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 PADI6Q6TGC4 694 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 RETREG2Q8NC44 543 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 DHX38Q92620 1227 aaKnown RBP32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 FAM49AQ9H0Q0 323 aaPredicted RBP32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 PDLIM7Q9NR12 457 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 CLCN3P51790 818 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 NDUFA8P51970 172 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 SLC12A3P55017 1021 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 C7orf61Q8IZ16 206 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 JPH2Q9BR39 696 aaPredicted RBP32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 SUGCTQ9HAC7 445 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 ATP6V0A4Q9HBG4 840 aa32.96■■■□□ 2.87
LIMCH1-211ENST00000509638 FAM237AA0A1B0GTK4 181 aa32.95■■■□□ 2.86
LIMCH1-211ENST00000509638 GADD45BO75293 160 aaPredicted RBP32.95■■■□□ 2.86
LIMCH1-211ENST00000509638 MCM6Q14566 821 aa32.95■■■□□ 2.86
LIMCH1-211ENST00000509638 EFCAB12Q6NXP0 572 aa32.95■■■□□ 2.86
LIMCH1-211ENST00000509638 SYT2Q8N9I0 419 aaPredicted RBP32.95■■■□□ 2.86
LIMCH1-211ENST00000509638 PRDM5Q9NQX1 630 aaPredicted RBP32.95■■■□□ 2.86
LIMCH1-211ENST00000509638 TBX21Q9UL17 535 aa32.95■■■□□ 2.86
LIMCH1-211ENST00000509638 SIP14410 1827 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 IGKV6-21A0A0C4DH24 114 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 SMIM35A0A1B0GVV1 85 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 DHX8Q14562 1220 aaKnown RBP32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 EXOC8Q8IYI6 725 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 LINC01465Q8N7H1 131 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 IQUBQ8NA54 791 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 MTRQ99707 1265 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 RUSC1Q9BVN2 902 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 XPNPEP1Q9NQW7 623 aa32.94■■■□□ 2.86
LIMCH1-211ENST00000509638 EVI5O60447 810 aa32.93■■■□□ 2.86
LIMCH1-211ENST00000509638 DRP2Q13474 957 aa32.93■■■□□ 2.86
LIMCH1-211ENST00000509638 DNAJB3Q8WWF6 145 aa32.93■■■□□ 2.86
LIMCH1-211ENST00000509638 PYM1Q9BRP8 204 aaKnown RBP32.93■■■□□ 2.86
LIMCH1-211ENST00000509638 TMEM39AQ9NV64 488 aa32.93■■■□□ 2.86
LIMCH1-211ENST00000509638 PRPF40AO75400 957 aaKnown RBP32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 SYKP43405 635 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 SH3RF1Q7Z6J0 888 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 MYH11P35749 1972 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 GAS2O43903 313 aaKnown RBP32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 TMOD1P28289 359 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 TRIM71Q2Q1W2 868 aaKnown RBP32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 RINT1Q6NUQ1 792 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 GPBP1Q86WP2 473 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 KIAA0319LQ8IZA0 1049 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 DPF3Q92784 378 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 HIPK3Q9H422 1215 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 CUEDC2Q9H467 287 aa32.92■■■□□ 2.86
LIMCH1-211ENST00000509638 LTBP2Q14767 1821 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 THPOP40225 353 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 UBE2HP62256 183 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 MKRN4PQ13434 485 aaPredicted RBP32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 CCDC155Q8N6L0 562 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 MCPH1Q8NEM0 835 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 CAGE1Q8TC20 777 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 TMEM143Q96AN5 459 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 MAP7D2Q96T17 732 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 NOC4LQ9BVI4 516 aaKnown RBP32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 AKT3Q9Y243 479 aa32.91■■■□□ 2.86
LIMCH1-211ENST00000509638 CEP290O15078 2479 aa32.9■■■□□ 2.86
LIMCH1-211ENST00000509638 CYP11B2P19099 503 aa32.9■■■□□ 2.86
LIMCH1-211ENST00000509638 MAEAQ7L5Y9 396 aa32.9■■■□□ 2.86
LIMCH1-211ENST00000509638 PPP1R12CQ9BZL4 782 aa32.9■■■□□ 2.86
LIMCH1-211ENST00000509638 DNM2P50570 870 aa32.89■■■□□ 2.86
LIMCH1-211ENST00000509638 RBL2Q08999 1139 aa32.89■■■□□ 2.86
LIMCH1-211ENST00000509638 BFSP2Q13515 415 aa32.89■■■□□ 2.86
LIMCH1-211ENST00000509638 C1orf186Q6ZWK4 172 aa32.89■■■□□ 2.86
LIMCH1-211ENST00000509638 RSPH3Q86UC2 560 aa32.89■■■□□ 2.86
LIMCH1-211ENST00000509638 GPRC5CQ9NQ84 441 aa32.89■■■□□ 2.86
LIMCH1-211ENST00000509638 TRIM43BA6NCK2 446 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 ACTN4O43707 911 aaKnown RBP32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 VTNP04004 478 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 RPLP2P05387 115 aaKnown RBP32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 CTSHP09668 335 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 CKBP12277 381 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 RGS19P49795 217 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 RAD51AP2Q09MP3 1159 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 TMEM62Q0P6H9 643 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 SV2BQ7L1I2 683 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 RPAINQ86UA6 219 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 TRIM43Q96BQ3 446 aaPredicted RBP32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 KCND2Q9NZV8 630 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 UMODL1Q5DID0 1318 aa32.88■■■□□ 2.85
LIMCH1-211ENST00000509638 GOLGA6L22H0YM25 854 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 PITPNM1O00562 1244 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 KIAA0355O15063 1070 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 FAM160A1Q05DH4 1040 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 FAM102BQ5T8I3 360 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 TCP11Q8WWU5 503 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 POLR3FQ9H1D9 316 aaPredicted RBP32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 MAGEF1Q9HAY2 307 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 SUCLA2Q9P2R7 463 aaPredicted RBP32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 SERTAD1Q9UHV2 236 aa32.87■■■□□ 2.85
LIMCH1-211ENST00000509638 CAND2O75155 1236 aa32.87■■■□□ 2.85
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms