RNA–Protein interactions for RNA: ENST00000505054.2

SYNE4-207, Transcript of spectrin repeat containing nuclear envelope family member 4, humanhuman

TSL 3

Gene SYNE4, Length 713 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4-207ENST00000505054 COL4A6Q14031 1691 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 MBLAC1A4D2B0 266 aaPredicted RBP18.9■□□□□ 0.62
SYNE4-207ENST00000505054 HBP1O60381 514 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 STBD1O95210 358 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 OATP04181 439 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 IGBP1P78318 339 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 ATP2C1P98194 919 aaPredicted RBP18.9■□□□□ 0.62
SYNE4-207ENST00000505054 PKP1Q13835 747 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 ZNF618Q5T7W0 954 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 TRMT1LQ7Z2T5 733 aaKnown RBP18.9■□□□□ 0.62
SYNE4-207ENST00000505054 BBXQ8WY36 941 aaPredicted RBP18.9■□□□□ 0.62
SYNE4-207ENST00000505054 FAM167AQ96KS9 214 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 LRFN3Q9BTN0 628 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 RGL1Q9NZL6 768 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 TUBE1Q9UJT0 475 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 MTUS1Q9ULD2 1270 aa18.9■□□□□ 0.62
SYNE4-207ENST00000505054 ARIH1Q9Y4X5 557 aaPredicted RBP18.9■□□□□ 0.62
SYNE4-207ENST00000505054 RALGAPA2Q2PPJ7 1873 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 RRN3P2A6NIE6 340 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 LAD1O00515 517 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 P4HBP07237 508 aaKnown RBP18.89■□□□□ 0.61
SYNE4-207ENST00000505054 TECP42680 631 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 QARSP47897 775 aaKnown RBP18.89■□□□□ 0.61
SYNE4-207ENST00000505054 PSMC5P62195 406 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 MBTPS1Q14703 1052 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 IL17AQ16552 155 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 TMEM31Q5JXX7 168 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 RUFY4Q6ZNE9 571 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 TNPO1Q92973 898 aaKnown RBP18.89■□□□□ 0.61
SYNE4-207ENST00000505054 DYDC2Q96IM9 177 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 EIF2AK1Q9BQI3 630 aaKnown RBP18.89■□□□□ 0.61
SYNE4-207ENST00000505054 LXNQ9BS40 222 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 SUGCTQ9HAC7 445 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 COL1A2P08123 1366 aa18.89■□□□□ 0.61
SYNE4-207ENST00000505054 TMEM150BA6NC51 233 aa18.88■□□□□ 0.61
SYNE4-207ENST00000505054 PRPHP41219 470 aa18.88■□□□□ 0.61
SYNE4-207ENST00000505054 FXR2P51116 673 aaKnown RBP eCLIP18.88■□□□□ 0.61
SYNE4-207ENST00000505054 CYP4A11Q02928 519 aa18.88■□□□□ 0.61
SYNE4-207ENST00000505054 ZNF484Q5JVG2 852 aa18.88■□□□□ 0.61
SYNE4-207ENST00000505054 FOXD4L5Q5VV16 416 aaPredicted RBP18.88■□□□□ 0.61
SYNE4-207ENST00000505054 FOXD4L4Q8WXT5 416 aaPredicted RBP18.88■□□□□ 0.61
SYNE4-207ENST00000505054 HSD17B14Q9BPX1 270 aa18.88■□□□□ 0.61
SYNE4-207ENST00000505054 ZSCAN16Q9H4T2 348 aaPredicted RBP18.88■□□□□ 0.61
SYNE4-207ENST00000505054 UBE2ZQ9H832 354 aaPredicted RBP18.88■□□□□ 0.61
SYNE4-207ENST00000505054 SLITRK3O94933 977 aa18.87■□□□□ 0.61
SYNE4-207ENST00000505054 C22orf31O95567 290 aa18.87■□□□□ 0.61
SYNE4-207ENST00000505054 ZSCAN22P10073 491 aaPredicted RBP18.87■□□□□ 0.61
SYNE4-207ENST00000505054 MKRN4PQ13434 485 aaPredicted RBP18.87■□□□□ 0.61
SYNE4-207ENST00000505054 CTTNQ14247 550 aaKnown RBP18.87■□□□□ 0.61
SYNE4-207ENST00000505054 TMEM266Q2M3C6 531 aa18.87■□□□□ 0.61
SYNE4-207ENST00000505054 XKR3Q5GH77 459 aa18.87■□□□□ 0.61
SYNE4-207ENST00000505054 MTHFD1LQ6UB35 978 aa18.87■□□□□ 0.61
SYNE4-207ENST00000505054 SEPT9Q9UHD8 586 aaPredicted RBP18.87■□□□□ 0.61
SYNE4-207ENST00000505054 INSL6Q9Y581 213 aa18.87■□□□□ 0.61
SYNE4-207ENST00000505054 CLIC4Q9Y696 253 aa18.87■□□□□ 0.61
SYNE4-207ENST00000505054 WDR81Q562E7 1941 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 RBAK-RBAKDNI3L0D1 243 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 AMHP03971 560 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 PDIA4P13667 645 aaKnown RBP18.86■□□□□ 0.61
SYNE4-207ENST00000505054 THPOP40225 353 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 SF3A1Q15459 793 aaKnown RBP18.86■□□□□ 0.61
SYNE4-207ENST00000505054 TARBP2Q15633 366 aaKnown RBP18.86■□□□□ 0.61
SYNE4-207ENST00000505054 FAM117BQ6P1L5 589 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 TAF2Q6P1X5 1199 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 ANO5Q75V66 913 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 C4orf19Q8IY42 314 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 IGSF22Q8N9C0 903 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 FBXO22Q8NEZ5 403 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 NEK9Q8TD19 979 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 NIFKQ9BYG3 293 aaKnown RBP18.86■□□□□ 0.61
SYNE4-207ENST00000505054 NRBP2Q9NSY0 501 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 PCDHA2Q9Y5H9 948 aa18.86■□□□□ 0.61
SYNE4-207ENST00000505054 ATG2AQ2TAZ0 1938 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP18.85■□□□□ 0.61
SYNE4-207ENST00000505054 DKC1O60832 514 aaKnown RBP eCLIP18.85■□□□□ 0.61
SYNE4-207ENST00000505054 GPR37L1O60883 481 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 MED24O75448 989 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 BMP15O95972 392 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 F13A1P00488 732 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 SPATA31C1P0DKV0 1188 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 KLRC1P26715 233 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 HOXD11P31277 338 aaPredicted RBP18.85■□□□□ 0.61
SYNE4-207ENST00000505054 HTRA4P83105 476 aaPredicted RBP18.85■□□□□ 0.61
SYNE4-207ENST00000505054 PTPAQ15257 358 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 LEXMQ3ZCV2 418 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 PLA2G4FQ68DD2 849 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 DTHD1Q6ZMT9 781 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.85■□□□□ 0.61
SYNE4-207ENST00000505054 TPH2Q8IWU9 490 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 SP7Q8TDD2 431 aaPredicted RBP18.85■□□□□ 0.61
SYNE4-207ENST00000505054 KHSRPQ92945 711 aaKnown RBP eCLIP18.85■□□□□ 0.61
SYNE4-207ENST00000505054 USP28Q96RU2 1077 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 CEP89Q96ST8 783 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 SH2D3AQ9BRG2 576 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 ZSWIM4Q9H7M6 989 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 CEP131Q9UPN4 1083 aa18.85■□□□□ 0.61
SYNE4-207ENST00000505054 DDX11L8A8MPP1 907 aa18.84■□□□□ 0.61
SYNE4-207ENST00000505054 PP2D1A8MPX8 630 aa18.84■□□□□ 0.61
SYNE4-207ENST00000505054 RSPH10B2B2RC85 870 aa18.84■□□□□ 0.61
SYNE4-207ENST00000505054 ZBTB39O15060 712 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 156 ms