RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 GJA10Q969M2 543 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 MRPL38Q96DV4 380 aaKnown RBP20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 PPP1R16BQ96T49 567 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 LRFN2Q9ULH4 789 aa20.26■□□□□ 0.83
SQSTM1-209ENST00000504627 M0R2N6 131 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 DGKIO75912 1065 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 OATP04181 439 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 BMP1P13497 986 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 TMOD1P28289 359 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 PKP1Q13835 747 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 KIZQ2M2Z5 673 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 MIER3Q7Z3K6 550 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 NPAS4Q8IUM7 802 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 UNC45AQ9H3U1 944 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 CDHR5Q9HBB8 845 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 AKT3Q9Y243 479 aa20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 NOC2LQ9Y3T9 749 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 MYH9P35579 1960 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-209ENST00000504627 MYH15Q9Y2K3 1946 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 COL4A6Q14031 1691 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 CCDC194A0A1B0GVG4 234 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 DENND3A2RUS2 1198 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 GPR182O15218 404 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 VTNP04004 478 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 RB1P06400 928 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 BMPR1AP36894 532 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 PRKCEQ02156 737 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 INF2Q27J81 1249 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 TIGD5Q53EQ6 642 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 EFCAB12Q6NXP0 572 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 ZNF689Q96CS4 500 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 MAP7D2Q96T17 732 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 OSMRQ99650 979 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 C11orf84Q9BUA3 381 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 PHF20Q9BVI0 1012 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 RC3H2Q9HBD1 1191 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 MTMR6Q9Y217 621 aa20.24■□□□□ 0.83
SQSTM1-209ENST00000504627 CYP3A7-CYP3A51PA0A087WV96 503 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 VPS37CA5D8V6 355 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 DTNBO60941 627 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 PSMD10O75832 226 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 CYP3A7P24462 503 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 CLCN3P51790 818 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 CRYBB1P53674 252 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 TTC3P53804 2025 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 NPY5RQ15761 445 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 LETM2Q2VYF4 491 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 MOXD1Q6UVY6 613 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 FAM43BQ6ZT52 329 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 TMEM40Q8WWA1 233 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 C8orf76Q96K31 380 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 TMX1Q9H3N1 280 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 ERVK-5Q9HDB9 667 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 DDX25Q9UHL0 483 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 ST3GAL5Q9UNP4 418 aa20.23■□□□□ 0.83
SQSTM1-209ENST00000504627 C5orf67F2Z3F1 127 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 H3BQV1 296 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 ZNF862O60290 1169 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 ZSCAN22P10073 491 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 UGCGQ16739 394 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 PAN2Q504Q3 1202 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 CMTR2Q8IYT2 770 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 LRRC71Q8N4P6 559 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 BANK1Q8NDB2 785 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 RDM1Q8NG50 284 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 CLP1Q92989 425 aaKnown RBP20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 UBE2ZQ9H832 354 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 RNF216Q9NWF9 866 aaPredicted RBP20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 ZDHHC9Q9Y397 364 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 PCDHB7Q9Y5E2 793 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 EVPLQ92817 2033 aa20.22■□□□□ 0.83
SQSTM1-209ENST00000504627 SARSP49591 514 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 NLRP11P59045 1033 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 TBC1D8BQ0IIM8 1120 aa20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 SCLT1Q96NL6 688 aa20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 NECAB3Q96P71 396 aaPredicted RBP20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 ADAM2Q99965 735 aa20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 C1orf112Q9NSG2 853 aa20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 LOXHD1Q8IVV2 1947 aa20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 TCF20Q9UGU0 1960 aaKnown RBP20.21■□□□□ 0.83
SQSTM1-209ENST00000504627 MARCH6O60337 910 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 MGEA5O60502 916 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 GPR32O75388 356 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 KCNA5P22460 613 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 TRIM29Q14134 588 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 EP400NLQ6ZTU2 488 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 PIK3AP1Q6ZUJ8 805 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 SLC24A5Q71RS6 500 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 NEK8Q86SG6 692 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 ZNF710Q8N1W2 664 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 FBXO18Q8NFZ0 1043 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 ETNPPLQ8TBG4 499 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 MBOAT7Q96N66 472 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 PLVAPQ9BX97 442 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 NSUN3Q9H649 340 aaKnown RBP20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 RGS18Q9NS28 235 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 GJB4Q9NTQ9 266 aa20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 SEPT9Q9UHD8 586 aaPredicted RBP20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 MRPL42Q9Y6G3 142 aaKnown RBP20.2■□□□□ 0.82
SQSTM1-209ENST00000504627 NLRC5Q86WI3 1866 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms