RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 HDAC1Q13547 482 aaPredicted RBP18.84■□□□□ 0.61
VIM-208ENST00000497849 WTAPQ15007 396 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 DGLUCYQ7Z3D6 616 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 PLCD3Q8N3E9 789 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 DTWD2Q8NBA8 298 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 RRP36Q96EU6 259 aaKnown RBP18.84■□□□□ 0.61
VIM-208ENST00000497849 KCNH7Q9NS40 1196 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 SPG21Q9NZD8 308 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 OTOGLQ3ZCN5 2332 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 TPRP12270 2363 aaKnown RBP18.83■□□□□ 0.61
VIM-208ENST00000497849 EOMESO95936 686 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 TRDNQ13061 729 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 UBE2SQ16763 222 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 ODR4Q5SWX8 454 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 PLEKHM2Q8IWE5 1019 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 SLC39A11Q8N1S5 342 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 LRRC43Q8N309 656 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 CYP2W1Q8TAV3 490 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 PPP1R16BQ96T49 567 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 OSMRQ99650 979 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 OSBPL3Q9H4L5 887 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 PSTPIP2Q9H939 334 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 CYP26B1Q9NR63 512 aa18.83■□□□□ 0.6
VIM-208ENST00000497849 DBR1Q9UK59 544 aaKnown RBP18.83■□□□□ 0.6
VIM-208ENST00000497849 NFASCO94856 1347 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 IGKV6D-21A0A0A0MT36 114 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 ERICH2A1L162 156 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 HIP1O00291 1037 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 ATG7O95352 703 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 KIZQ2M2Z5 673 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 ATAT1Q5SQI0 421 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 CATIPQ7Z7H3 387 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 PCDHA6Q9UN73 950 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 PCDHA8Q9Y5H6 950 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 TAF6LQ9Y6J9 622 aa18.82■□□□□ 0.6
VIM-208ENST00000497849 ZBTB42B2RXF5 422 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 HOXA2O43364 376 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 KRT37O76014 449 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 LMNAP02545 664 aaKnown RBP18.81■□□□□ 0.6
VIM-208ENST00000497849 CYP21A2P08686 494 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 EPCAMP16422 314 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 SMARCA1P28370 1054 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 CRYBB1P53674 252 aaPredicted RBP18.81■□□□□ 0.6
VIM-208ENST00000497849 ITGB3BPQ13352 177 aaPredicted RBP18.81■□□□□ 0.6
VIM-208ENST00000497849 KIAA2013Q8IYS2 634 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 RTP3Q9BQQ7 232 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 MXRA8Q9BRK3 442 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 MYL10Q9BUA6 226 aa18.81■□□□□ 0.6
VIM-208ENST00000497849 SEC63Q9UGP8 760 aaKnown RBP18.81■□□□□ 0.6
VIM-208ENST00000497849 SPDYE3A6NKU9 549 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 HBP1O60381 514 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 GPR32O75388 356 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 SLC26A2P50443 739 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 ANTXR2P58335 489 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 TDGQ13569 410 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 CLLU1OSQ5K130 101 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 EXOC6Q8TAG9 804 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 KCNG4Q8TDN1 519 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 IGDCC4Q8TDY8 1250 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 MAP3K14Q99558 947 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 SDF4Q9BRK5 362 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 DZANK1Q9NVP4 752 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 DUSP12Q9UNI6 340 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 C2orf16Q68DN1 1984 aa18.8■□□□□ 0.6
VIM-208ENST00000497849 FANCMQ8IYD8 2048 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 NT5C1B-RDH14C9J2C7 533 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 PLEKHA8P1O95397 391 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 CXCL14O95715 111 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 CCNE2O96020 404 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 ABI1Q8IZP0 508 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 SIX5Q8N196 739 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 SRBD1Q8N5C6 995 aaKnown RBP18.79■□□□□ 0.6
VIM-208ENST00000497849 SLC22A17Q8WUG5 538 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 AUTS2Q8WXX7 1259 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 SEMA4AQ9H3S1 761 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 R4GN57 208 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 COL1A2P08123 1366 aa18.79■□□□□ 0.6
VIM-208ENST00000497849 C22orf31O95567 290 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 VTNP04004 478 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 ATP4AP20648 1035 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 CA8P35219 290 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 PUM1Q14671 1186 aaKnown RBP eCLIP18.78■□□□□ 0.65e-14■□□□□ 11
VIM-208ENST00000497849 SART3Q15020 963 aaKnown RBP18.78■□□□□ 0.6
VIM-208ENST00000497849 ZNF484Q5JVG2 852 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 B4GALNT3Q6L9W6 998 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 ABHD15Q6UXT9 468 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 TMC5Q6UXY8 1006 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 ECHDC2Q86YB7 292 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 CCDC60Q8IWA6 550 aaPredicted RBP18.78■□□□□ 0.6
VIM-208ENST00000497849 ZNF654Q8IZM8 581 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 CMTR1Q8N1G2 835 aaKnown RBP18.78■□□□□ 0.6
VIM-208ENST00000497849 CTCFLQ8NI51 663 aaPredicted RBP18.78■□□□□ 0.6
VIM-208ENST00000497849 ZBP1Q9H171 429 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 KCNK12Q9HB15 430 aa18.78■□□□□ 0.6
VIM-208ENST00000497849 AGO4Q9HCK5 861 aaKnown RBP18.78■□□□□ 0.6
VIM-208ENST00000497849 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.77■□□□□ 0.6
VIM-208ENST00000497849 METAP2P50579 478 aaKnown RBP eCLIP18.77■□□□□ 0.65e-13■■■□□ 17.9
VIM-208ENST00000497849 TMEM173Q86WV6 379 aaPredicted RBP18.77■□□□□ 0.6
VIM-208ENST00000497849 VPS52Q8N1B4 723 aa18.77■□□□□ 0.6
VIM-208ENST00000497849 NCOA7Q8NI08 942 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms