RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 GAS2O43903 313 aaKnown RBP18.3■□□□□ 0.52
SF3A1-209ENST00000496189 RPS6KA5O75582 802 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 VTNP04004 478 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 CD52P31358 61 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 RABGGTBP53611 331 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 CRYBB1P53674 252 aaPredicted RBP18.3■□□□□ 0.52
SF3A1-209ENST00000496189 KIZQ2M2Z5 673 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 XKR9Q5GH70 373 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 ANO5Q75V66 913 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 NLRP7Q8WX94 980 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 NKX2-4Q9H2Z4 354 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 SEMA6BQ9H3T3 888 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 ZNF576Q9H609 170 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 TET1Q8NFU7 2136 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 MAFO75444 373 aaPredicted RBP18.29■□□□□ 0.52
SF3A1-209ENST00000496189 PBX2P40425 430 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 NLRP11P59045 1033 aaKnown RBP18.29■□□□□ 0.52
SF3A1-209ENST00000496189 DEFB103AP81534 67 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 NFX1Q12986 1120 aaKnown RBP18.29■□□□□ 0.52
SF3A1-209ENST00000496189 PTGDRQ13258 359 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 TARBP2Q15633 366 aaKnown RBP18.29■□□□□ 0.52
SF3A1-209ENST00000496189 PLA2G4FQ68DD2 849 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 SPRYD3Q8NCJ5 442 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 PPP1R16BQ96T49 567 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 RAD9AQ99638 391 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 OSMRQ99650 979 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 TUFT1Q9NNX1 390 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 LRWD1Q9UFC0 647 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 PCDHB6Q9Y5E3 794 aa18.29■□□□□ 0.52
SF3A1-209ENST00000496189 SLITRK3O94933 977 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 LYPLA2O95372 231 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 GJB5O95377 273 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 FXR2P51116 673 aaKnown RBP eCLIP18.28■□□□□ 0.523e-8■□□□□ 10.2
SF3A1-209ENST00000496189 NBR1Q14596 966 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 FAM117BQ6P1L5 589 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 DTHD1Q6ZMT9 781 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 TCP11Q8WWU5 503 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 HSD17B14Q9BPX1 270 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 SH2D3AQ9BRG2 576 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 INO80BQ9C086 356 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-209ENST00000496189 ZSCAN16Q9H4T2 348 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-209ENST00000496189 ANKEF1Q9NU02 776 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 MTMR10Q9NXD2 777 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 SUCLA2Q9P2R7 463 aaPredicted RBP18.28■□□□□ 0.52
SF3A1-209ENST00000496189 PADI3Q9ULW8 664 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 INSL6Q9Y581 213 aa18.28■□□□□ 0.52
SF3A1-209ENST00000496189 DENND3A2RUS2 1198 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 TMEM150BA6NC51 233 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 BMP15O95972 392 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 CA3P07451 260 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 PRPHP41219 470 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 NPEPPSP55786 919 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 PDIA5Q14554 519 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 TCTN1Q2MV58 587 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.27■□□□□ 0.52
SF3A1-209ENST00000496189 LINC01465Q8N7H1 131 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 YME1L1Q96TA2 773 aa18.27■□□□□ 0.52
SF3A1-209ENST00000496189 GAS2L1Q99501 681 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-209ENST00000496189 POLR3CQ9BUI4 534 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-209ENST00000496189 GCOM2Q9BZD3 368 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-209ENST00000496189 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.27■□□□□ 0.52
SF3A1-209ENST00000496189 DAXXQ9UER7 740 aaPredicted RBP18.27■□□□□ 0.52
SF3A1-209ENST00000496189 EVPLQ92817 2033 aa18.27■□□□□ 0.51
SF3A1-209ENST00000496189 UPP2O95045 317 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 STBD1O95210 358 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 STAG3L1P0CL83 205 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 XRCC6P12956 609 aaKnown RBP eCLIP18.26■□□□□ 0.51
SF3A1-209ENST00000496189 MUTP22033 750 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 TOB1P50616 345 aaPredicted RBP18.26■□□□□ 0.51
SF3A1-209ENST00000496189 KRT79Q5XKE5 535 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 FERMT3Q86UX7 667 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 ZNF410Q86VK4 478 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 RHPN2Q8IUC4 686 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 PSPC1Q8WXF1 523 aaKnown RBP18.26■□□□□ 0.51
SF3A1-209ENST00000496189 NACC1Q96RE7 527 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 MTRQ99707 1265 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 AGO3Q9H9G7 860 aaKnown RBP18.26■□□□□ 0.51
SF3A1-209ENST00000496189 WRAP73Q9P2S5 460 aaPredicted RBP18.26■□□□□ 0.51
SF3A1-209ENST00000496189 LRFN2Q9ULH4 789 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 MTMR6Q9Y217 621 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 YBX2Q9Y2T7 364 aaKnown RBP18.26■□□□□ 0.51
SF3A1-209ENST00000496189 MICAL3Q7RTP6 2002 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 SIP14410 1827 aa18.26■□□□□ 0.51
SF3A1-209ENST00000496189 IGKV6-21A0A0C4DH24 114 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 GPR32O75388 356 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 DGAT1O75907 488 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 ZSCAN20P17040 1043 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-209ENST00000496189 EIF4BP23588 611 aaKnown RBP18.25■□□□□ 0.51
SF3A1-209ENST00000496189 RPA1P27694 616 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 ANP32AP39687 249 aaKnown RBP18.25■□□□□ 0.51
SF3A1-209ENST00000496189 CCT6AP40227 531 aaKnown RBP18.25■□□□□ 0.51
SF3A1-209ENST00000496189 GPC3P51654 580 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 EMC2Q15006 297 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 TOP1MTQ969P6 601 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 TTYH1Q9H313 450 aaPredicted RBP18.25■□□□□ 0.51
SF3A1-209ENST00000496189 DHX33Q9H6R0 707 aaKnown RBP18.25■□□□□ 0.51
SF3A1-209ENST00000496189 ATP6V0A4Q9HBG4 840 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 ST3GAL5Q9UNP4 418 aa18.25■□□□□ 0.51
SF3A1-209ENST00000496189 NOC2LQ9Y3T9 749 aaKnown RBP18.25■□□□□ 0.51
SF3A1-209ENST00000496189 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms