RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 RPAP3Q9H6T3 665 aaPredicted RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 OGFRQ9NZT2 677 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 TBC1D7Q9P0N9 293 aa11.8□□□□□ -0.52
USP4-214ENST00000491791 WRAP73Q9P2S5 460 aaPredicted RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 BZW2Q9Y6E2 419 aaKnown RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 ASTN2O75129 1339 aaPredicted RBP11.8□□□□□ -0.52
USP4-214ENST00000491791 PDE4DIPQ5VU43 2346 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 LRRC53A6NM62 1247 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 BTNL10A8MVZ5 291 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 RSPH10B2B2RC85 870 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 PMM2O15305 246 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 USO1O60763 962 aaKnown RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 PRPF6O94906 941 aaKnown RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 ABL1P00519 1130 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 RSPH10BP0C881 870 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 DSG3P32926 999 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 PRKCIP41743 596 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 QARSP47897 775 aaKnown RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 KIF11P52732 1056 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 RPS6P62753 249 aaKnown RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 KRT76Q01546 638 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 ITIH3Q06033 890 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 KIF5AQ12840 1032 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 MTMR2Q13614 643 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 PGM5Q15124 567 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 PPP2R5AQ15172 486 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 SLC9C1Q4G0N8 1177 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 MUM1L1Q5H9M0 696 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 C10orf76Q5T2E6 689 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 SFMBT2Q5VUG0 894 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 RRAGAQ7L523 313 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 MIER3Q7Z3K6 550 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 VSIG10LQ86VR7 867 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 MSL3Q8N5Y2 521 aaKnown RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 IL31RAQ8NI17 732 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 PIGOQ8TEQ8 1089 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 GOLGA1Q92805 767 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 SLC35C1Q96A29 364 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 TRERF1Q96PN7 1200 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 RAVER2Q9HCJ3 691 aaKnown RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 PXMP2Q9NR77 195 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 FAM207AQ9NSI2 230 aaPredicted RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 ANKEF1Q9NU02 776 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 ARGLU1Q9NWB6 273 aaPredicted RBP11.79□□□□□ -0.52
USP4-214ENST00000491791 RAB21Q9UL25 225 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 USP20Q9Y2K6 914 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 PCDHA13Q9Y5I0 950 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 PAPPA2Q9BXP8 1791 aa11.79□□□□□ -0.52
USP4-214ENST00000491791 ARHGEF35A5YM69 484 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 RCCD1A6NED2 376 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 TLR2O60603 784 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 AKAP3O75969 853 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 GFPT2O94808 682 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 ZRANB2O95218 330 aaKnown RBP eCLIP11.78□□□□□ -0.52
USP4-214ENST00000491791 EPB41P11171 864 aaKnown RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 ALAS1P13196 640 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 PSMC2P35998 433 aaKnown RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 EIF4A3P38919 411 aaKnown RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 CHMP4BP1P59074 171 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 ENPEPQ07075 957 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 SPP2Q13103 211 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 MTMR1Q13613 665 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 COG2Q14746 738 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 PKN2Q16513 984 aaKnown RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 SUPT20HL1Q3ZLR7 823 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 KLHDC7AQ5VTJ3 777 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 ZNF746Q6NUN9 644 aaPredicted RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 RNF207Q6ZRF8 634 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 CATSPERGQ6ZRH7 1159 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 ZNF572Q7Z3I7 529 aaPredicted RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 CACNA2D4Q7Z3S7 1137 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 KIAA1328Q86T90 577 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 DAW1Q8N136 415 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 MYCT1Q8N699 235 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 TRIM58Q8NG06 486 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 SMCR8Q8TEV9 937 aaPredicted RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 HNRNPLLQ8WVV9 542 aaKnown RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 INPP4AQ96PE3 977 aaPredicted RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 TAAR1Q96RJ0 339 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 UIMC1Q96RL1 719 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 TANGO6Q9C0B7 1094 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 LACRTQ9GZZ8 138 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 LUC7LQ9NQ29 371 aaKnown RBP11.78□□□□□ -0.52
USP4-214ENST00000491791 PICK1Q9NRD5 415 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 JRKLQ9Y4A0 524 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 NFASCO94856 1347 aa11.78□□□□□ -0.52
USP4-214ENST00000491791 WDR64B1ANS9 1081 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 P4HA2O15460 535 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 GCNT3O95395 438 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 XRCC5P13010 732 aaKnown RBP11.77□□□□□ -0.53
USP4-214ENST00000491791 PON1P27169 355 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 CCND2P30279 289 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 RARRES1P49788 294 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 SOX10P56693 466 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 JAM2P57087 298 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 PSMC5P62195 406 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 UBXN2AP68543 259 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 RAD51AP2Q09MP3 1159 aa11.77□□□□□ -0.53
USP4-214ENST00000491791 BRD3Q15059 726 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms