RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	E2F7	Q96AV8	911 aa		6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	TUBGCP5	Q96RT8	1024 aa		6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	ELF4	Q99607	663 aa	Predicted RBP	6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	FOXB1	Q99853	325 aa		6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	KLC2	Q9H0B6	622 aa		6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	CD248	Q9HCU0	757 aa		6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	TOMM22	Q9NS69	142 aa		6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	INTS7	Q9NVH2	962 aa	Known RBP	6.99	□□□□□ -1.29
PTPN4-212	ENST00000488896	UBA6	A0AVT1	1052 aa	Predicted RBP	6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	ZNF891	A8MT65	544 aa	Predicted RBP	6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	ARHGAP6	O43182	974 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	ZNF623	O75123	536 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	CYP17A1	P05093	508 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	CR2	P20023	1033 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	FNTB	P49356	437 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	ROM1	Q03395	351 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	AGBL4	Q5VU57	503 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	TRIM68	Q6AZZ1	485 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	SLFN12L	Q6IEE8	588 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	USP30	Q70CQ3	517 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	NIM1K	Q8IY84	436 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	DNER	Q8NFT8	737 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896		Q8TCH9	128 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	NINJ1	Q92982	152 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	WWC2-AS2	Q96NR7	200 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	IFT57	Q9NWB7	429 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	OXSM	Q9NWU1	459 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	OAZ3	Q9UMX2	235 aa		6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	ZFR2	Q9UPR6	939 aa	Known RBP	6.98	□□□□□ -1.29
PTPN4-212	ENST00000488896	PATE3	B3GLJ2	98 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	GAS7	O60861	476 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	APOL3	O95236	402 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	PRL	P01236	227 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	ATP2A2	P16615	1042 aa	Known RBP	6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	MAP3K12	Q12852	859 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	ADAM15	Q13444	863 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	TTC38	Q5R3I4	469 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	BORCS6	Q96GS4	357 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	OR14A2	Q96R54	314 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	OR10A2	Q9H208	303 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	THG1L	Q9NWX6	298 aa	Known RBP	6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	PUF60	Q9UHX1	559 aa	Known RBP	6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	TCAF1	Q9Y4C2	921 aa		6.97	□□□□□ -1.29
PTPN4-212	ENST00000488896	PCBP1	Q15365	356 aa	Known RBP eCLIP	6.96	□□□□□ -1.3
PTPN4-212	ENST00000488896	FUK	Q8N0W3	1084 aa		6.96	□□□□□ -1.3
PTPN4-212	ENST00000488896	SH3RF3	Q8TEJ3	882 aa	Predicted RBP	6.96	□□□□□ -1.3
PTPN4-212	ENST00000488896	CHTF18	Q8WVB6	975 aa		6.96	□□□□□ -1.3
PTPN4-212	ENST00000488896	MAML3	Q96JK9	1138 aa		6.96	□□□□□ -1.3
PTPN4-212	ENST00000488896	C16orf92	Q96LL3	132 aa		6.96	□□□□□ -1.3
PTPN4-212	ENST00000488896	MTFR1L	Q9H019	292 aa		6.96	□□□□□ -1.3
PTPN4-212	ENST00000488896	MATN2	O00339	956 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	ANTXR2	P58335	489 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	ACAP1	Q15027	740 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	CREB3L3	Q68CJ9	461 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	ESRP1	Q6NXG1	681 aa	Known RBP	6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	SPRED1	Q7Z699	444 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	BCL6B	Q8N143	479 aa	Predicted RBP	6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	RTF1	Q92541	710 aa	Known RBP	6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	FEZ1	Q99689	392 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	TARS2	Q9BW92	718 aa	Known RBP	6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	PLA2G12B	Q9BX93	195 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	C1QTNF3	Q9BXJ4	246 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	SAE1	Q9UBE0	346 aa	Predicted RBP	6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	JAG2	Q9Y219	1238 aa		6.95	□□□□□ -1.3
PTPN4-212	ENST00000488896	FAM83G	A6ND36	823 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	F2	P00734	622 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	STAT3	P40763	770 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	SELENOP	P49908	381 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	NFYC	Q13952	458 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	EPHA7	Q15375	998 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	CDSN	Q15517	529 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	HS1BP3	Q53T59	392 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	DALRD3	Q5D0E6	543 aa	Known RBP	6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	C7orf31	Q8N865	590 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	OR5AN1	Q8NGI8	311 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	CFHR4	Q92496	578 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	GPR101	Q96P66	508 aa	Predicted RBP	6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	DENND2A	Q9ULE3	1009 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	MYRF	Q9Y2G1	1151 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	SPO11	Q9Y5K1	396 aa		6.94	□□□□□ -1.3
PTPN4-212	ENST00000488896	MUSK	O15146	869 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	ATP2C1	P98194	919 aa	Predicted RBP	6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	DSG1	Q02413	1049 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	MYBPC3	Q14896	1274 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	SART3	Q15020	963 aa	Known RBP	6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	NME9	Q86XW9	330 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	MFSD3	Q96ES6	412 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	TMEM176A	Q96HP8	235 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	ADO	Q96SZ5	270 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	CDK5RAP1	Q96SZ6	601 aa	Known RBP	6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	POFUT1	Q9H488	388 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	TSC22D4	Q9Y3Q8	395 aa		6.93	□□□□□ -1.3
PTPN4-212	ENST00000488896	DGKD	Q16760	1214 aa		6.92	□□□□□ -1.3
PTPN4-212	ENST00000488896	SPDYA	Q5MJ70	313 aa		6.92	□□□□□ -1.3
PTPN4-212	ENST00000488896	TIGD7	Q6NT04	549 aa	Predicted RBP	6.92	□□□□□ -1.3
PTPN4-212	ENST00000488896	KLHDC10	Q6PID8	442 aa		6.92	□□□□□ -1.3
PTPN4-212	ENST00000488896	RPGR	Q92834	1020 aa	Known RBP	6.92	□□□□□ -1.3
PTPN4-212	ENST00000488896	MYL10	Q9BUA6	226 aa		6.92	□□□□□ -1.3
PTPN4-212	ENST00000488896	KRTAP4-11	Q9BYQ6	195 aa		6.92	□□□□□ -1.3

Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms