RNA–Protein interactions for RNA: ENST00000488543.1

HDAC6-230, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 2,484 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-230ENST00000488543 B4DLN1 442 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 LYPLA2O95372 231 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 UGCGQ16739 394 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 LY6KQ17RY6 165 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 ZNF792Q3KQV3 632 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 GNPTABQ3T906 1256 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 TEX35Q5T0J7 233 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 C17orf99Q6UX52 265 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 CYFIP1Q7L576 1253 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 FBXO16Q8IX29 292 aaPredicted RBP13.4□□□□□ -0.26
HDAC6-230ENST00000488543 UBXN4Q92575 508 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 TSG101Q99816 390 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 PDGFCQ9NRA1 345 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 HTTP42858 3142 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 MCM3APO60318 1980 aa13.4□□□□□ -0.26
HDAC6-230ENST00000488543 A0A1W2PQC6 194 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 TMEM150BA6NC51 233 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 AKR1B15C9JRZ8 316 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 RNF225M0QZC1 329 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 MAFGO15525 162 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 MFAP3LO75121 409 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 TADA3O75528 432 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 ARIH2O95376 493 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 MYBP10242 640 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 GAP43P17677 238 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 MTIF2P46199 727 aaKnown RBP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 TM4SF4P48230 202 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 FXR1P51114 621 aaKnown RBP eCLIP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 BMT2Q1RMZ1 405 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 DEFB115Q30KQ5 88 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 SENP7Q9BQF6 1050 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 COL4A3BPQ9Y5P4 624 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 ARID2Q68CP9 1835 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 ARHGAP6O43182 974 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 STRNO43815 780 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 TBCAO75347 108 aaKnown RBP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 ABL1P00519 1130 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 PNMA6AP0CW24 399 aaPredicted RBP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 QARSP47897 775 aaKnown RBP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 JAK3P52333 1124 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 ZNF131P52739 623 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 KRT76Q01546 638 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 PLEKHH3Q7Z736 793 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 DPP9Q86TI2 863 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 PPFIBP1Q86W92 1011 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 HHIPL1Q96JK4 782 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 PANX2Q96RD6 677 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 FIZ1Q96SL8 496 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 OLFML3Q9NRN5 406 aa13.39□□□□□ -0.27
HDAC6-230ENST00000488543 DBR1Q9UK59 544 aaKnown RBP13.39□□□□□ -0.27
HDAC6-230ENST00000488543 SFI1A8K8P3 1242 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 STAM2O75886 525 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 FGFR1OPO95684 399 aaKnown RBP13.38□□□□□ -0.27
HDAC6-230ENST00000488543 GUCY2CP25092 1073 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 CASP14P31944 242 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 DNM2P50570 870 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 SREBF2Q12772 1141 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 MAPK7Q13164 816 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 TERF2Q15554 542 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 RAD9BQ6WBX8 426 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 CAPNS2Q96L46 248 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 FAM53CQ9NYF3 392 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 KCND2Q9NZV8 630 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 NFASCO94856 1347 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 ARHGEF35A5YM69 484 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 RASSF10A6NK89 507 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 WDR64B1ANS9 1081 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 PRPF6O94906 941 aaKnown RBP13.38□□□□□ -0.27
HDAC6-230ENST00000488543 FAM13AO94988 1023 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 UBA1P22314 1058 aaKnown RBP13.38□□□□□ -0.27
HDAC6-230ENST00000488543 FECHP22830 423 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 CTGFP29279 349 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 CASQ1P31415 396 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 SFNP31947 248 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 PLA2G4AP47712 749 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 FKBP3Q00688 224 aaKnown RBP13.38□□□□□ -0.27
HDAC6-230ENST00000488543 GRB14Q14449 540 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 ZNF746Q6NUN9 644 aaPredicted RBP13.38□□□□□ -0.27
HDAC6-230ENST00000488543 ARMCX2Q7L311 632 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 DAW1Q8N136 415 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 RDM1Q8NG50 284 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 NPLOC4Q8TAT6 608 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 CEP63Q96MT8 703 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 ZFYVE28Q9HCC9 887 aa13.38□□□□□ -0.27
HDAC6-230ENST00000488543 JPH1Q9HDC5 661 aaPredicted RBP13.38□□□□□ -0.27
HDAC6-230ENST00000488543 DNAH12Q6ZR08 3092 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 POLR3GO15318 223 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-230ENST00000488543 ZSCAN12O43309 604 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 KIF20AO95235 890 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 MAPK4P31152 587 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 ICAM3P32942 547 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 RARRES1P49788 294 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 GJC2Q5T442 439 aaPredicted RBP13.37□□□□□ -0.27
HDAC6-230ENST00000488543 C4orf19Q8IY42 314 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 COPS5Q92905 334 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 CDHR1Q96JP9 859 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 NOC4LQ9BVI4 516 aaKnown RBP13.37□□□□□ -0.27
HDAC6-230ENST00000488543 SLC9A2Q9UBY0 812 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 ODF2LQ9ULJ1 636 aa13.37□□□□□ -0.27
HDAC6-230ENST00000488543 STX10O60499 249 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms