RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 YWHABP31946 246 aaKnown RBP11.5□□□□□ -0.57
SKA1-204ENST00000488454 PTPN11Q06124 597 aaPredicted RBP11.5□□□□□ -0.57
SKA1-204ENST00000488454 PPFIA1Q13136 1202 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 UGCGQ16739 394 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 TPRNQ4KMQ1 711 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 ZNF484Q5JVG2 852 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 SYMPKQ92797 1274 aaKnown RBP11.5□□□□□ -0.57
SKA1-204ENST00000488454 CCSER1Q9C0I3 900 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 DDX19AQ9NUU7 478 aaKnown RBP11.5□□□□□ -0.57
SKA1-204ENST00000488454 HDAC6Q9UBN7 1215 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 KIAA1024Q9UPX6 916 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 NOD1Q9Y239 953 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 MROH7Q68CQ1 1323 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 NRCAMQ92823 1304 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 IGSF9BQ9UPX0 1349 aa11.5□□□□□ -0.57
SKA1-204ENST00000488454 GOLGA6L22H0YM25 854 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 TLR3O15455 904 aaKnown RBP11.49□□□□□ -0.57
SKA1-204ENST00000488454 ZNF862O60290 1169 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 LYPLA2O95372 231 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 SMIM10L2AP0DMW4 78 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 SMIM10L2BP0DMW5 78 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 INSRRP14616 1297 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 ATP4AP20648 1035 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 IGBP1P78318 339 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 GRIK4Q16099 956 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 XKR9Q5GH70 373 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 RRAGBQ5VZM2 374 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 CCDC73Q6ZRK6 1079 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 SESTD1Q86VW0 696 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 EXOC8Q8IYI6 725 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 EPSTI1Q96J88 318 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 CEP170P1Q96L14 293 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 PLIN2Q99541 437 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 PYM1Q9BRP8 204 aaKnown RBP11.49□□□□□ -0.57
SKA1-204ENST00000488454 MMTAG2Q9BU76 263 aaKnown RBP11.49□□□□□ -0.57
SKA1-204ENST00000488454 NIFKQ9BYG3 293 aaKnown RBP11.49□□□□□ -0.57
SKA1-204ENST00000488454 ANKEF1Q9NU02 776 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 SETD4Q9NVD3 440 aa11.49□□□□□ -0.57
SKA1-204ENST00000488454 ARHGEF35A5YM69 484 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 DCDC2CA8MYV0 355 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 PQBP1O60828 265 aaKnown RBP11.48□□□□□ -0.57
SKA1-204ENST00000488454 CMA1P23946 247 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 KARSQ15046 597 aaKnown RBP11.48□□□□□ -0.57
SKA1-204ENST00000488454 MTERF2Q49AM1 385 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 AXDND1Q5T1B0 1012 aaPredicted RBP11.48□□□□□ -0.57
SKA1-204ENST00000488454 SWT1Q5T5J6 900 aaKnown RBP11.48□□□□□ -0.57
SKA1-204ENST00000488454 SHC4Q6S5L8 630 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 SLC43A3Q8NBI5 491 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 PIGOQ8TEQ8 1089 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 PPP1R13LQ8WUF5 828 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 JPH2Q9BR39 696 aaPredicted RBP11.48□□□□□ -0.57
SKA1-204ENST00000488454 HTATIP2Q9BUP3 242 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 PANK2Q9BZ23 570 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 WRAP73Q9P2S5 460 aaPredicted RBP11.48□□□□□ -0.57
SKA1-204ENST00000488454 GTF2IRD1Q9UHL9 959 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 TSR3Q9UJK0 312 aaKnown RBP11.48□□□□□ -0.57
SKA1-204ENST00000488454 PPME1Q9Y570 386 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 GRIN2DO15399 1336 aa11.48□□□□□ -0.57
SKA1-204ENST00000488454 COL1A2P08123 1366 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 A0A087WWV3 80 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 A0A1W2PQ27 194 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 A0A1W2PQ64 194 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 A0A1W2PQD8 194 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 MAGEB2O15479 319 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 SSBP05455 408 aaKnown RBP eCLIP11.47□□□□□ -0.57
SKA1-204ENST00000488454 DNAJB2P25686 324 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 KLRC1P26715 233 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 TMOD1P28289 359 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 STAT6P42226 847 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 CDK7P50613 346 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 TBC1D8BQ0IIM8 1120 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 ECM1Q16610 540 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 PTGISQ16647 500 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 HYIQ5T013 277 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 C1orf53Q5VUE5 145 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 RESP18Q5W5W9 173 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 PLA2G4FQ68DD2 849 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 CLEC17AQ6ZS10 378 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 USP49Q70CQ1 688 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 ANO5Q75V66 913 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 IQUBQ8NA54 791 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 RETREG2Q8NC44 543 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 SLC7A3Q8WY07 619 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 PNMA5Q96PV4 448 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 CYP26B1Q9NR63 512 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 DBR1Q9UK59 544 aaKnown RBP11.47□□□□□ -0.57
SKA1-204ENST00000488454 KCNH3Q9ULD8 1083 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 ATP11BQ9Y2G3 1177 aa11.47□□□□□ -0.57
SKA1-204ENST00000488454 KIAA0100Q14667 2235 aaKnown RBP11.46□□□□□ -0.57
SKA1-204ENST00000488454 RCCD1A6NED2 376 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 E9PMD0 336 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 ZBTB39O15060 712 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 POLR2DO15514 142 aaKnown RBP11.46□□□□□ -0.57
SKA1-204ENST00000488454 PRPF40AO75400 957 aaKnown RBP11.46□□□□□ -0.57
SKA1-204ENST00000488454 STBD1O95210 358 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 EYA4O95677 639 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 PLCG1P19174 1290 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 RFC5P40937 340 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 RARRES1P49788 294 aa11.46□□□□□ -0.57
SKA1-204ENST00000488454 DNM2P50570 870 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms