RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 DUSP12Q9UNI6 340 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 DMXL1Q9Y485 3027 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 ZNF292O60281 2723 aa10.63□□□□□ -0.71
COL17A1-207ENST00000488320 WDR87Q6ZQQ6 2873 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 CFHP08603 1231 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 KLRC1P26715 233 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 FAM189BP81408 668 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 IMMTQ16891 758 aaKnown RBP10.62□□□□□ -0.71
COL17A1-207ENST00000488320 LRRC55Q6ZSA7 311 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 CCDC149Q6ZUS6 474 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 LRRC43Q8N309 656 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 RNF169Q8NCN4 708 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 CASD1Q96PB1 797 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 CNNM2Q9H8M5 875 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 CA14Q9ULX7 337 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 EVPLQ92817 2033 aa10.62□□□□□ -0.71
COL17A1-207ENST00000488320 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 NT5C1B-RDH14C9J2C7 533 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 NARSO43776 548 aaKnown RBP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 DCNP07585 359 aaKnown RBP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 EPCAMP16422 314 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 ZSCAN20P17040 1043 aaPredicted RBP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 ALDH7A1P49419 539 aaKnown RBP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 METAP2P50579 478 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 STAT5BP51692 787 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 TBC1D8BQ0IIM8 1120 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 MTMR1Q13613 665 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 NONOQ15233 471 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 KIAA0319Q5VV43 1072 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 PLPPR4Q7Z2D5 763 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 TICAM2Q86XR7 235 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 TMEM169Q96HH4 297 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 PPP1R16BQ96T49 567 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 PCYT2Q99447 389 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 JPH1Q9HDC5 661 aaPredicted RBP10.61□□□□□ -0.71
COL17A1-207ENST00000488320 IGSF9Q9P2J2 1179 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 NCDNQ9UBB6 729 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 WNT16Q9UBV4 365 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 SLC9A2Q9UBY0 812 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 RCAN3Q9UKA8 241 aa10.61□□□□□ -0.71
COL17A1-207ENST00000488320 ERICH2A1L162 156 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 MAFGO15525 162 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 CYTH3O43739 400 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 KINO60870 393 aaKnown RBP10.6□□□□□ -0.71
COL17A1-207ENST00000488320 SP9P0CG40 484 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 ITGB5P18084 799 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 ATXN1P54253 815 aaKnown RBP10.6□□□□□ -0.71
COL17A1-207ENST00000488320 PDE1AP54750 535 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 GRM4Q14833 912 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 KIZQ2M2Z5 673 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 SLC35G1Q2M3R5 365 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 C1orf210Q8IVY1 113 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 VPS52Q8N1B4 723 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 SLC39A11Q8N1S5 342 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 TMEM40Q8WWA1 233 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 AUTS2Q8WXX7 1259 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 OSMRQ99650 979 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 SIT1Q9Y3P8 196 aa10.6□□□□□ -0.71
COL17A1-207ENST00000488320 CACNA1GO43497 2377 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 KRBA1A5PL33 1030 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 MEIS2O14770 477 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 SDSP20132 328 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 GBP2P32456 591 aaPredicted RBP10.59□□□□□ -0.71
COL17A1-207ENST00000488320 CRYBB1P53674 252 aaPredicted RBP10.59□□□□□ -0.71
COL17A1-207ENST00000488320 BCAR1P56945 870 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 GIT2Q14161 759 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 SEC23AQ15436 765 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 VARS2Q5ST30 1063 aaKnown RBP10.59□□□□□ -0.71
COL17A1-207ENST00000488320 CWC27Q6UX04 472 aaKnown RBP10.59□□□□□ -0.71
COL17A1-207ENST00000488320 GPR149Q86SP6 731 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 FAM228AQ86W67 206 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 PPFIBP1Q86W92 1011 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 KIAA0319LQ8IZA0 1049 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 GPR161Q8N6U8 529 aaKnown RBP10.59□□□□□ -0.71
COL17A1-207ENST00000488320 SECISBP2LQ93073 1101 aaKnown RBP10.59□□□□□ -0.71
COL17A1-207ENST00000488320 SDF4Q9BRK5 362 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 SFXN1Q9H9B4 322 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 TBC1D17Q9HA65 648 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 JADE2Q9NQC1 790 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 UBIAD1Q9Y5Z9 338 aa10.59□□□□□ -0.71
COL17A1-207ENST00000488320 TPRP12270 2363 aaKnown RBP10.59□□□□□ -0.71
COL17A1-207ENST00000488320 SALL3Q9BXA9 1300 aa10.58□□□□□ -0.71
COL17A1-207ENST00000488320 KMT2BQ9UMN6 2715 aaPredicted RBP10.58□□□□□ -0.72
COL17A1-207ENST00000488320 ZFHX4Q86UP3 3567 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 SPDYE3A6NKU9 549 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 PIK3CDO00329 1044 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 BACH1O14867 736 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 IFIT3O14879 490 aaKnown RBP10.58□□□□□ -0.72
COL17A1-207ENST00000488320 HBP1O60381 514 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 KLRC2P26717 231 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 ACTR2P61160 394 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 TRDNQ13061 729 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 DSC3Q14574 896 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 LETM2Q2VYF4 491 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 CYB5R4Q7L1T6 521 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 METTL13Q8N6R0 699 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 HELQQ8TDG4 1101 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 SLC22A17Q8WUG5 538 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 RSAD2Q8WXG1 361 aa10.58□□□□□ -0.72
COL17A1-207ENST00000488320 RRP36Q96EU6 259 aaKnown RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms