RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 CSRNP1Q96S65 589 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 H2AFZP0C0S5 128 aa19.58■□□□□ 0.73
VIM-206ENST00000487938 HDLBPQ00341 1268 aaKnown RBP19.58■□□□□ 0.73
VIM-206ENST00000487938 IFI16Q16666 785 aaKnown RBP19.58■□□□□ 0.73
VIM-206ENST00000487938 H2AFVQ71UI9 128 aa19.58■□□□□ 0.73
VIM-206ENST00000487938 DDX42Q86XP3 938 aaKnown RBP eCLIP19.58■□□□□ 0.73
VIM-206ENST00000487938 OLFML3Q9NRN5 406 aa19.58■□□□□ 0.73
VIM-206ENST00000487938 ZMYM2Q9UBW7 1377 aa19.58■□□□□ 0.73
VIM-206ENST00000487938 SCN9AQ15858 1988 aa19.58■□□□□ 0.73
VIM-206ENST00000487938 GAP43P17677 238 aa19.58■□□□□ 0.72
VIM-206ENST00000487938 PSMC2P35998 433 aaKnown RBP19.58■□□□□ 0.72
VIM-206ENST00000487938 ERVK-9P63128 1117 aa19.58■□□□□ 0.72
VIM-206ENST00000487938 HLTFQ14527 1009 aaKnown RBP eCLIP19.58■□□□□ 0.724e-7■□□□□ 8.4
VIM-206ENST00000487938 PEX26Q7Z412 305 aa19.58■□□□□ 0.72
VIM-206ENST00000487938 BCAS4Q8TDM0 211 aa19.58■□□□□ 0.72
VIM-206ENST00000487938 ACER1Q8TDN7 264 aa19.58■□□□□ 0.72
VIM-206ENST00000487938 SCFD2Q8WU76 684 aa19.58■□□□□ 0.72
VIM-206ENST00000487938 SERPINA10Q9UK55 444 aa19.58■□□□□ 0.72
VIM-206ENST00000487938 GRIN2DO15399 1336 aa19.57■□□□□ 0.72
VIM-206ENST00000487938 EVI5O60447 810 aa19.57■□□□□ 0.72
VIM-206ENST00000487938 CYP2J2P51589 502 aa19.57■□□□□ 0.72
VIM-206ENST00000487938 AOC3Q16853 763 aa19.57■□□□□ 0.72
VIM-206ENST00000487938 VPS36Q86VN1 386 aa19.57■□□□□ 0.72
VIM-206ENST00000487938 NENFQ9UMX5 172 aa19.57■□□□□ 0.72
VIM-206ENST00000487938 PIK3CDO00329 1044 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 EIF3HO15372 352 aaKnown RBP eCLIP19.56■□□□□ 0.72
VIM-206ENST00000487938 PSMD10O75832 226 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 STAT2P52630 851 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 GALCP54803 685 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 PDCLQ13371 301 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 DAAM2Q86T65 1068 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 LNX1Q8TBB1 728 aaPredicted RBP19.56■□□□□ 0.72
VIM-206ENST00000487938 ACTRT1Q8TDG2 376 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 DDX47Q9H0S4 455 aaKnown RBP19.56■□□□□ 0.72
VIM-206ENST00000487938 PARVGQ9HBI0 331 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 WRAP73Q9P2S5 460 aaPredicted RBP19.56■□□□□ 0.72
VIM-206ENST00000487938 FBXL5Q9UKA1 691 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 CES2O00748 559 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 ITGA4P13612 1032 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 STAT1P42224 750 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 RDH13Q8NBN7 331 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 WHAMMQ8TF30 809 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 TAF1DQ9H5J8 278 aaPredicted RBP19.56■□□□□ 0.72
VIM-206ENST00000487938 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.56■□□□□ 0.72
VIM-206ENST00000487938 TUFT1Q9NNX1 390 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 OSGEPQ9NPF4 335 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 DNAJC12Q9UKB3 198 aa19.56■□□□□ 0.72
VIM-206ENST00000487938 NOC2LQ9Y3T9 749 aaKnown RBP19.56■□□□□ 0.72
VIM-206ENST00000487938 TCP10L2B9ZVM9 353 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 TRIM49P0CI25 452 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 TRIM49CP0CI26 452 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 ZBTB48P10074 688 aaPredicted RBP19.55■□□□□ 0.72
VIM-206ENST00000487938 FERP16591 822 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 PLS1Q14651 629 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 CBWD6Q4V339 395 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 CBWD3Q5JTY5 395 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 CBWD5Q5RIA9 395 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 GLYCTKQ8IVS8 523 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 ISCUQ9H1K1 167 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 SHTN1A0MZ66 631 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 KRIT1O00522 736 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 EIF3DO15371 548 aaKnown RBP eCLIP19.55■□□□□ 0.72
VIM-206ENST00000487938 SART1O43290 800 aaKnown RBP19.55■□□□□ 0.72
VIM-206ENST00000487938 GAS7O60861 476 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 NPM3O75607 178 aaKnown RBP19.55■□□□□ 0.72
VIM-206ENST00000487938 FMO5P49326 533 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 FKBP1AP62942 108 aaKnown RBP19.55■□□□□ 0.72
VIM-206ENST00000487938 DRAP1Q14919 205 aaPredicted RBP19.55■□□□□ 0.72
VIM-206ENST00000487938 ZNF720Q7Z2F6 126 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 MREGQ8N565 214 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 LMBR1Q8WVP7 490 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.55■□□□□ 0.722e-7■■■■□ 26.5
VIM-206ENST00000487938 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.55■□□□□ 0.72
VIM-206ENST00000487938 STXBP5LQ9Y2K9 1186 aa19.55■□□□□ 0.72
VIM-206ENST00000487938 COL11A2P13942 1736 aaPredicted RBP19.54■□□□□ 0.72
VIM-206ENST00000487938 GTPBP10A4D1E9 387 aaKnown RBP19.54■□□□□ 0.72
VIM-206ENST00000487938 GCOM1H8Y6P7 765 aaPredicted RBP19.54■□□□□ 0.72
VIM-206ENST00000487938 PGRMC1O00264 195 aaKnown RBP19.54■□□□□ 0.72
VIM-206ENST00000487938 PPP1R12BO60237 982 aaPredicted RBP19.54■□□□□ 0.72
VIM-206ENST00000487938 POLR2MP0CAP2 368 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 ARP10275 920 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 ABCB4P21439 1286 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 SOX5P35711 763 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 CORO7P57737 925 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 SKOR1P84550 965 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 ZYXQ15942 572 aaKnown RBP19.54■□□□□ 0.72
VIM-206ENST00000487938 MAATS1Q7Z4T9 603 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 SLFN11Q7Z7L1 901 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 FAM178BQ8IXR5 827 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 FIZ1Q96SL8 496 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 PLAAQ9Y263 795 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 F8VZ95 297 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 ZEB2O60315 1214 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 ECHS1P30084 290 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 PRELPP51888 382 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 PPARDQ03181 441 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 PPP2R5CQ13362 524 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 MAEAQ7L5Y9 396 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 NT5DC3Q86UY8 548 aa19.54■□□□□ 0.72
VIM-206ENST00000487938 SLC30A5Q8TAD4 765 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms