RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 FGF18O76093 207 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 C22orf31O95567 290 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 VTNP04004 478 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 ZNF76P36508 570 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 APOBRQ0VD83 1088 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 AP3B2Q13367 1082 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 PTPN21Q16825 1174 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 DUSP6Q16828 381 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 KIZQ2M2Z5 673 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 SWSAP1Q6NVH7 229 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 PDXDC2PQ6P474 469 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 FAM228AQ86W67 206 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 VN1R2Q8NFZ6 395 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 SUSD6Q92537 303 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 OSMRQ99650 979 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 ADAM2Q99965 735 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 ZNF302Q9NR11 478 aa15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 NAP1L2Q9ULW6 460 aaPredicted RBP15.73■□□□□ 0.11
SQSTM1-208ENST00000485412 IPO5O00410 1097 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 EDIL3O43854 480 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 HBP1O60381 514 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 RPS6KA5O75582 802 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 FGFR1P11362 822 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 AVPR2P30518 371 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 TECP42680 631 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 PFKFB3Q16875 520 aaPredicted RBP15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 TSGA10IPQ3SY00 556 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 ODR4Q5SWX8 454 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 RNF20Q5VTR2 975 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 PLPP4Q5VZY2 271 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 PDE12Q6L8Q7 609 aaKnown RBP15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 NIPA1Q7RTP0 329 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 COLGALT1Q8NBJ5 622 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 ASIC4Q96FT7 647 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 C1orf112Q9NSG2 853 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 ST3GAL5Q9UNP4 418 aa15.72■□□□□ 0.11
SQSTM1-208ENST00000485412 C9IYK1 514 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 hCG_1984214I3L0E3 225 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 SP100P23497 879 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 SLC26A2P50443 739 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 CLCN3P51790 818 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 ERVFC1P60507 584 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 FAM160B1Q5W0V3 765 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 LLGL2Q6P1M3 1020 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 FAM43BQ6ZT52 329 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 ZNF713Q8N859 430 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 PHKBQ93100 1093 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 LENG9Q96B70 501 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 ZNF668Q96K58 619 aaPredicted RBP15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 APOL5Q9BWW9 433 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 ENTPD7Q9NQZ7 604 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 TYW1Q9NV66 732 aaKnown RBP15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 CACNA1HO95180 2353 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 COL1A2P08123 1366 aa15.71■□□□□ 0.11
SQSTM1-208ENST00000485412 PLXNA3P51805 1871 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 GPR32O75388 356 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 CYP3A4P08684 503 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 LAG3P18627 525 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 METAP2P50579 478 aaKnown RBP eCLIP15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 ZNF484Q5JVG2 852 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 ANKRD54Q6NXT1 300 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 MIS18BP1Q6P0N0 1132 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 SLC24A5Q71RS6 500 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 GJA10Q969M2 543 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 ZNF577Q9BSK1 485 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 ATP6V0A4Q9HBG4 840 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 RGS18Q9NS28 235 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 RNF19AQ9NV58 838 aa15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 PUF60Q9UHX1 559 aaKnown RBP15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 MAFBQ9Y5Q3 323 aaPredicted RBP15.7■□□□□ 0.1
SQSTM1-208ENST00000485412 MYO10Q9HD67 2058 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 ZFHX2Q9C0A1 2572 aaPredicted RBP15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 H0Y858 1186 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 FSCN2O14926 492 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 GPR182O15218 404 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 ZNF862O60290 1169 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 PBX3P40426 434 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 DSC3Q14574 896 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 UGCGQ16739 394 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 PRR16Q569H4 304 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 LRRC55Q6ZSA7 311 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 Q6ZUG5 572 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 CKAP2LQ8IYA6 745 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 LRRC71Q8N4P6 559 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 METTL13Q8N6R0 699 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 BRF1Q92994 677 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 RIPOR3Q96MK2 946 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 TCF25Q9BQ70 676 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 ZMYND12Q9H0C1 365 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 CWH43Q9H720 699 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 TSHZ2Q9NRE2 1034 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 GABBR1Q9UBS5 961 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 LZTS1Q9Y250 596 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 NR2E1Q9Y466 385 aa15.69■□□□□ 0.1
SQSTM1-208ENST00000485412 NID2Q14112 1375 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 ESYT2A0FGR8 921 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 CDC45O75419 566 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 PDGFBP01127 241 aaPredicted RBP15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 NUBP1P53384 320 aa15.68■□□□□ 0.1
SQSTM1-208ENST00000485412 CRYBB1P53674 252 aaPredicted RBP15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms