RNA–Protein interactions for RNA: ENST00000480943.5

VPS50-215, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 801 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-215ENST00000480943 CDC42EP5Q6NZY7 148 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 THAP5Q7Z6K1 395 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 FAM83AQ86UY5 434 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 DZIP1Q86YF9 867 aaKnown RBP7.49□□□□□ -1.21
VPS50-215ENST00000480943 ZGPATQ8N5A5 531 aaKnown RBP7.49□□□□□ -1.21
VPS50-215ENST00000480943 DNAJB8Q8NHS0 232 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 CYB5D2Q8WUJ1 264 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 OPTNQ96CV9 577 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 MRIQ9BWK5 157 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 CARS2Q9HA77 564 aaKnown RBP7.49□□□□□ -1.21
VPS50-215ENST00000480943 C19orf73Q9NVV2 129 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 ST14Q9Y5Y6 855 aa7.49□□□□□ -1.21
VPS50-215ENST00000480943 PDS5AQ29RF7 1337 aaKnown RBP7.49□□□□□ -1.21
VPS50-215ENST00000480943 RBBP6Q7Z6E9 1792 aaKnown RBP7.48□□□□□ -1.21
VPS50-215ENST00000480943 MANSC4A6NHS7 340 aaPredicted RBP7.48□□□□□ -1.21
VPS50-215ENST00000480943 SURF6O75683 361 aaKnown RBP7.48□□□□□ -1.21
VPS50-215ENST00000480943 TNK2Q07912 1038 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 VGLL4Q14135 290 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 PUM1Q14671 1186 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS50-215ENST00000480943 TNNI3KQ59H18 835 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 FKBP1CQ5VVH2 108 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 DCAF15Q66K64 600 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 SPTY2D1Q68D10 685 aaPredicted RBP7.48□□□□□ -1.21
VPS50-215ENST00000480943 REC114Q7Z4M0 266 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 DDX55Q8NHQ9 600 aaKnown RBP eCLIP7.48□□□□□ -1.21
VPS50-215ENST00000480943 SSH3Q8TE77 659 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 ZNF296Q8WUU4 475 aaPredicted RBP7.48□□□□□ -1.21
VPS50-215ENST00000480943 WRNIP1Q96S55 665 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 USP40Q9NVE5 1235 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 HMG20BQ9P0W2 317 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 REV1Q9UBZ9 1251 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 CNOT6Q9ULM6 557 aaKnown RBP7.48□□□□□ -1.21
VPS50-215ENST00000480943 CEP131Q9UPN4 1083 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 POLR3KQ9Y2Y1 108 aaPredicted RBP7.48□□□□□ -1.21
VPS50-215ENST00000480943 FPGT-TNNI3KV9GXZ4 949 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 LOC285556D6RIA3 1793 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 MROH7-TTC4A0A0A0MT08 1334 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 GAKO14976 1311 aa7.48□□□□□ -1.21
VPS50-215ENST00000480943 RFX7Q2KHR2 1363 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 BAZ2AQ9UIF9 1905 aaKnown RBP7.47□□□□□ -1.21
VPS50-215ENST00000480943 UNCXA6NJT0 531 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 UPK3BL1B0FP48 263 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 UPK3BL2E5RIL1 263 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 TRIM13O60858 407 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 HTR3BO95264 441 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 UQCRFS1P1P0C7P4 283 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 INSRRP14616 1297 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 GARTP22102 1010 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 MCAMP43121 646 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 BTDP43251 543 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 TTC39AQ5SRH9 613 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 CEP85Q6P2H3 762 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 MIGA2Q7L4E1 593 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 HS2ST1Q7LGA3 356 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 CTU1Q7Z7A3 348 aaKnown RBP7.47□□□□□ -1.21
VPS50-215ENST00000480943 SPATA5Q8NB90 893 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 FBXO27Q8NI29 283 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 FAM151AQ8WW52 585 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 ZKSCAN4Q969J2 545 aaPredicted RBP7.47□□□□□ -1.21
VPS50-215ENST00000480943 HOOK2Q96ED9 719 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 ZNF341Q9BYN7 854 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 XYLT2Q9H1B5 865 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 R3HDMLQ9H3Y0 253 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 KLHL3Q9UH77 587 aa7.47□□□□□ -1.21
VPS50-215ENST00000480943 TNRC18O15417 2968 aaPredicted RBP7.47□□□□□ -1.21
VPS50-215ENST00000480943 DDX60LQ5H9U9 1706 aaKnown RBP7.47□□□□□ -1.21
VPS50-215ENST00000480943 CCL15-CCL14A0A0B4J2E2 113 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 RGS3P49796 1198 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 INHBEP58166 350 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 MECOMQ03112 1051 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 PICALMQ13492 652 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 CCL15Q16663 113 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 CCDC158Q5M9N0 1113 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 OTUD7BQ6GQQ9 843 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 SLFN12Q8IYM2 578 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 PIWIL2Q8TC59 973 aaKnown RBP7.46□□□□□ -1.22
VPS50-215ENST00000480943 PPP1R13LQ8WUF5 828 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 UBE2FQ969M7 185 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 CCDC8Q9H0W5 538 aaPredicted RBP7.46□□□□□ -1.22
VPS50-215ENST00000480943 GPR108Q9NPR9 543 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 DDX4Q9NQI0 724 aaKnown RBP7.46□□□□□ -1.22
VPS50-215ENST00000480943 RAI14Q9P0K7 980 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 ZSWIM5Q9P217 1185 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 GGT7Q9UJ14 662 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 RCAN3Q9UKA8 241 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 EXOC6BQ9Y2D4 811 aa7.46□□□□□ -1.22
VPS50-215ENST00000480943 SUPT16HQ9Y5B9 1047 aaKnown RBP7.46□□□□□ -1.22
VPS50-215ENST00000480943 TLR3O15455 904 aaKnown RBP7.45□□□□□ -1.22
VPS50-215ENST00000480943 FKTNO75072 461 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 SEMA7AO75326 666 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 ENTPD3O75355 529 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 EIF4A3P38919 411 aaKnown RBP7.45□□□□□ -1.22
VPS50-215ENST00000480943 GTF2A2P52657 109 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 RHBDL3P58872 404 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 GSTO1P78417 241 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 EFEMP1Q12805 493 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 CRHR2Q13324 411 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 FBXL19Q6PCT2 694 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 ERO1BQ86YB8 467 aa7.45□□□□□ -1.22
VPS50-215ENST00000480943 ZFPM1Q8IX07 1006 aa7.45□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms