RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 USP17L5A8MUK1 530 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 ANP32DO95626 131 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 PTK2Q05397 1052 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 ADCY2Q08462 1091 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 KCNB1Q14721 858 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 ARHGEF18Q6ZSZ5 1173 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 TRPM8Q7Z2W7 1104 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 TGS1Q96RS0 853 aaKnown RBP14.58□□□□□ -0.07
USP42-206ENST00000479544 VCPKMTQ9H867 229 aa14.58□□□□□ -0.07
USP42-206ENST00000479544 GOLGA8IPA6NC78 632 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 GOLGA8JA6NMD2 632 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 PPP4R3AQ6IN85 833 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 PALM2Q8IXS6 379 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 SLC17A8Q8NDX2 589 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 ZKSCAN4Q969J2 545 aaPredicted RBP14.58□□□□□ -0.08
USP42-206ENST00000479544 TLR10Q9BXR5 811 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 PCDHA6Q9UN73 950 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 PCDHA8Q9Y5H6 950 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 KDM3AQ9Y4C1 1321 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 BCL9LQ86UU0 1499 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.58□□□□□ -0.08
USP42-206ENST00000479544 CAND2O75155 1236 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 YY1P25490 414 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 AARSP49588 968 aaKnown RBP eCLIP14.58□□□□□ -0.08
USP42-206ENST00000479544 MYL7Q01449 175 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 TROAPQ12815 778 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 CLUL1Q15846 466 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 METTL13Q8N6R0 699 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 HOOK2Q96ED9 719 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 RABGAP1Q9Y3P9 1069 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 GOLGA8SH3BPF8 625 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 GOLGA8MH3BSY2 632 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 K7ENM7 598 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 GAS7O60861 476 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 DYNLT1P63172 113 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 IRX4P78413 519 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 ERFEQ4G0M1 354 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 C10orf76Q5T2E6 689 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 SUGP1Q8IWZ8 645 aaKnown RBP14.58□□□□□ -0.08
USP42-206ENST00000479544 SCOCQ9UIL1 159 aa14.58□□□□□ -0.08
USP42-206ENST00000479544 PHLDB3Q6NSJ2 640 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 AENQ8WTP8 325 aaKnown RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 ATP2A2P16615 1042 aaKnown RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 TMCO4Q5TGY1 634 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 WDR59Q6PJI9 974 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 CCDC110Q8TBZ0 833 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 C9orf72Q96LT7 481 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 IMPG2Q9BZV3 1241 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 TNNI1P19237 187 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 HOXA13P31271 388 aaPredicted RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 GALCP54803 685 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 CTTNQ14247 550 aaKnown RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 CCDC137Q6PK04 289 aaKnown RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 ANKRD35Q8N283 1001 aa14.57□□□□□ -0.08
USP42-206ENST00000479544 SH3RF3Q8TEJ3 882 aaPredicted RBP14.57□□□□□ -0.08
USP42-206ENST00000479544 NHSL1Q5SYE7 1610 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 KIF1AQ12756 1690 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 ZNF233A6NK53 670 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 COG7P83436 770 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 DRAP1Q14919 205 aaPredicted RBP14.56□□□□□ -0.08
USP42-206ENST00000479544 PDXDC2PQ6P474 469 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 USP37Q86T82 979 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 CNBD1Q8NA66 436 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.56□□□□□ -0.08
USP42-206ENST00000479544 ABTB1Q969K4 478 aaPredicted RBP14.56□□□□□ -0.08
USP42-206ENST00000479544 DONSONQ9NYP3 566 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 SPATA31A1Q5TZJ5 1347 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 EPHB6O15197 1021 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 PFDN1O60925 122 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 CD19P15391 556 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 SLMAPQ14BN4 828 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 WDR44Q5JSH3 913 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 TMED8Q6PL24 325 aaPredicted RBP14.56□□□□□ -0.08
USP42-206ENST00000479544 CCSER1Q9C0I3 900 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 MAPK4P31152 587 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 PSMC2P35998 433 aaKnown RBP14.56□□□□□ -0.08
USP42-206ENST00000479544 BYSLQ13895 437 aaKnown RBP14.56□□□□□ -0.08
USP42-206ENST00000479544 CCDC89Q8N998 374 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 LRRC37BQ96QE4 947 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 SH2D3AQ9BRG2 576 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 TXLNGQ9NUQ3 528 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 PXDNQ92626 1479 aa14.56□□□□□ -0.08
USP42-206ENST00000479544 AMPD2Q01433 879 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 BARGINQ6ZT62 677 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 RAD54LQ92698 747 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 EHMT1Q9H9B1 1298 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 MYCLP12524 364 aaPredicted RBP14.55□□□□□ -0.08
USP42-206ENST00000479544 SERPINB6P35237 376 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 KLHDC7AQ5VTJ3 777 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 CASC4Q6P4E1 433 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 FUKQ8N0W3 1084 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 TTC1Q99614 292 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 ZNF804BA4D1E1 1349 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 FAM205AQ6ZU69 1335 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 CFAP69A5D8W1 941 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 I3L4J1 428 aa14.55□□□□□ -0.08
USP42-206ENST00000479544 FTLP02792 175 aaPredicted RBP14.55□□□□□ -0.08
USP42-206ENST00000479544 RANBP1P43487 201 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms