RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 PRDM6Q9NQX0 595 aa16.96■□□□□ 0.31
LIMS1-212ENST00000474038 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 SEPT9Q9UHD8 586 aaPredicted RBP16.96■□□□□ 0.31
LIMS1-212ENST00000474038 MAGEB2O15479 319 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 DKC1O60832 514 aaKnown RBP eCLIP16.95■□□□□ 0.3
LIMS1-212ENST00000474038 SLITRK3O94933 977 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 GJB5O95377 273 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 TECP42680 631 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 CYP4A11Q02928 519 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 TMEM62Q0P6H9 643 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 CTTNQ14247 550 aaKnown RBP16.95■□□□□ 0.3
LIMS1-212ENST00000474038 MTERF2Q49AM1 385 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 ANO5Q75V66 913 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 NME8Q8N427 588 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 ARNTL2Q8WYA1 636 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 SEPT8Q92599 483 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 CEP89Q96ST8 783 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 HSD17B14Q9BPX1 270 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 SH2D3AQ9BRG2 576 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 CDY2AQ9Y6F7 541 aa16.95■□□□□ 0.3
LIMS1-212ENST00000474038 IER5Q5VY09 327 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 PLA2G4FQ68DD2 849 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 FERMT3Q86UX7 667 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 TPH2Q8IWU9 490 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 C4orf19Q8IY42 314 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 MYOCDQ8IZQ8 938 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 MICALL1Q8N3F8 863 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 METTL13Q8N6R0 699 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 LINC01465Q8N7H1 131 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 ZSWIM4Q9H7M6 989 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 CUL9Q8IWT3 2517 aa16.94■□□□□ 0.3
LIMS1-212ENST00000474038 GHRP10912 638 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 CLCN3P51790 818 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 TBC1D8BQ0IIM8 1120 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 LPIN1Q14693 890 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 FBXO47Q5MNV8 452 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 EFCAB12Q6NXP0 572 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 BRAPQ7Z569 592 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 LRRC71Q8N4P6 559 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 NEK9Q8TD19 979 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 RAD9AQ99638 391 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 COL25A1Q9BXS0 654 aaPredicted RBP16.93■□□□□ 0.3
LIMS1-212ENST00000474038 CELF4Q9BZC1 486 aaKnown RBP16.93■□□□□ 0.3
LIMS1-212ENST00000474038 TRPV2Q9Y5S1 764 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 KDM3AQ9Y4C1 1321 aa16.93■□□□□ 0.3
LIMS1-212ENST00000474038 TTC3P53804 2025 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 TRANK1O15050 2925 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 M0QZ92 97 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 LAD1O00515 517 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 ZBTB39O15060 712 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 LYPLA2O95372 231 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 AMHP03971 560 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 YWHABP31946 246 aaKnown RBP16.92■□□□□ 0.3
LIMS1-212ENST00000474038 FXR2P51116 673 aaKnown RBP eCLIP16.92■□□□□ 0.3
LIMS1-212ENST00000474038 NPEPPSP55786 919 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 TMEM266Q2M3C6 531 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 ZNF579Q8NAF0 562 aaKnown RBP16.92■□□□□ 0.3
LIMS1-212ENST00000474038 IFIH1Q9BYX4 1025 aaKnown RBP16.92■□□□□ 0.3
LIMS1-212ENST00000474038 SUGCTQ9HAC7 445 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 CYP26B1Q9NR63 512 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 MTMR6Q9Y217 621 aa16.92■□□□□ 0.3
LIMS1-212ENST00000474038 PRRC2BQ5JSZ5 2229 aaKnown RBP16.92■□□□□ 0.3
LIMS1-212ENST00000474038 COL4A4P53420 1690 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-212ENST00000474038 REV3LO60673 3130 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 IGKV6-21A0A0C4DH24 114 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 LOC101059915A0A1B0GWI6 518 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-212ENST00000474038 MAFO75444 373 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-212ENST00000474038 MED24O75448 989 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 VTNP04004 478 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 HSP90AA1P07900 732 aaKnown RBP16.91■□□□□ 0.3
LIMS1-212ENST00000474038 SPATA31C1P0DKV0 1188 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 TMOD1P28289 359 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 PRPHP41219 470 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 ATP2C1P98194 919 aaPredicted RBP16.91■□□□□ 0.3
LIMS1-212ENST00000474038 RESTQ13127 1097 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 IL17AQ16552 155 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 OTUD6AQ7L8S5 288 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 CATSPER3Q86XQ3 398 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 CEP170P1Q96L14 293 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 AGO3Q9H9G7 860 aaKnown RBP16.91■□□□□ 0.3
LIMS1-212ENST00000474038 CDHR5Q9HBB8 845 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 MTUS1Q9ULD2 1270 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 SQORQ9Y6N5 450 aa16.91■□□□□ 0.3
LIMS1-212ENST00000474038 LINC01553A4QN01 128 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 STX6O43752 255 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 UPP2O95045 317 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 GRB10Q13322 594 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 DRP2Q13474 957 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 PDIA5Q14554 519 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 KIZQ2M2Z5 673 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 XKR9Q5GH70 373 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 TSHZ1Q6ZSZ6 1077 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 IGSF22Q8N9C0 903 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 ERMNQ8TAM6 284 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 APBB2Q92870 758 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 MAP7D2Q96T17 732 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 PPP1R16BQ96T49 567 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 POLR3CQ9BUI4 534 aaPredicted RBP16.9■□□□□ 0.3
LIMS1-212ENST00000474038 TUFT1Q9NNX1 390 aa16.9■□□□□ 0.3
LIMS1-212ENST00000474038 LRWD1Q9UFC0 647 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms