RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 NMD3Q96D46 503 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 ERP27Q96DN0 273 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 SPSB2Q99619 263 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CENPKQ9BS16 269 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CELF4Q9BZC1 486 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 RXFP1Q9HBX9 757 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PDP2Q9P2J9 529 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 NCAPD2Q15021 1401 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 EDC4Q6P2E9 1401 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 PXDNLA1KZ92 1463 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 COL24A1Q17RW2 1714 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 E7ENQ6 273 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TNFRSF10AO00220 468 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RANBP6O60518 1105 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 GFRA3O60609 400 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 DDX58O95786 925 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 SRGNP10124 158 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ALOX15P16050 662 aaPredicted RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 EPHB2P29323 1055 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PLTPP55058 493 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RCN1Q15293 331 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 KIAA0753Q2KHM9 967 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PROSER3Q2NL68 480 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TSHZ1Q6ZSZ6 1077 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TAOK1Q7L7X3 1001 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CCDC25Q86WR0 208 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 DZIP3Q86Y13 1208 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 IRF2BP1Q8IU81 584 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 MB21D2Q8IYB1 491 aaPredicted RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 NBPF15Q8N660 670 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 FAM13CQ8NE31 585 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CEP70Q8NHQ1 597 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ASAP3Q8TDY4 903 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 PTPRN2Q92932 1015 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 STMN2Q93045 179 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 OSBP2Q969R2 916 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ZNF653Q96CK0 615 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 KAZALD1Q96I82 304 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CDK5RAP3Q96JB5 506 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 CNOT6LQ96LI5 555 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 FAM81BQ96LP2 452 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RMDN2Q96LZ7 410 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 TSPAN18Q96SJ8 248 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 SIKE1Q9BRV8 207 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 FAM192AQ9GZU8 254 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 ZMYND12Q9H0C1 365 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 RANBP17Q9H2T7 1088 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 TMOD4Q9NZQ9 345 aa4.57□□□□□ -1.68
VPS50-210ENST00000471188 LARSQ9P2J5 1176 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 DBR1Q9UK59 544 aaKnown RBP4.57□□□□□ -1.68
VPS50-210ENST00000471188 XDHP47989 1333 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 PDS5AQ29RF7 1337 aaKnown RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 hCG_1642624A0A1W2PR95 340 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 GRID2IPA4D2P6 1211 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 LRRC53A6NM62 1247 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 PDLIM1O00151 329 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 LSM1O15116 133 aaKnown RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 UNC5CO95185 931 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 BAG3O95817 575 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ZFXP17010 805 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 RPL13P26373 211 aaKnown RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 STX2P32856 288 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 RASSF2P50749 326 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 GRAMD4Q6IC98 578 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 RNF19BQ6ZMZ0 732 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SESTD1Q86VW0 696 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ZBTB8BQ8NAP8 495 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 NEK9Q8TD19 979 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP4.56□□□□□ -1.685e-8■■■■■ 65.3
VPS50-210ENST00000471188 MPP4Q96JB8 637 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 DNAJC1Q96KC8 554 aaKnown RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 NR1H4Q96RI1 486 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 TRIM51Q9BSJ1 452 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SPATA16Q9BXB7 569 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ZNF180Q9UJW8 692 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 MYH2Q9UKX2 1941 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 NALCNQ8IZF0 1738 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 ANKARQ7Z5J8 1434 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 FAM170AA1A519 330 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 TRIM43BA6NCK2 446 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SH2B2O14492 632 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 CAPN9O14815 690 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 WFS1O76024 890 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 PENKP01210 267 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 ZFYP08048 801 aaPredicted RBP4.56□□□□□ -1.68
VPS50-210ENST00000471188 SPATA31D3P0C874 917 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 CCDC166P0CW27 439 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 GM2AP17900 193 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 KLRC1P26715 233 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 MLH1P40692 756 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 MMP13P45452 471 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 COG7P83436 770 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 UBE4AQ14139 1066 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SLC29A2Q14542 456 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 PLS1Q14651 629 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 GALNTL6Q49A17 601 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 CCDC152Q4G0S7 254 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 EPHA10Q5JZY3 1008 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 SPATA31D4Q6ZUB0 917 aa4.56□□□□□ -1.68
VPS50-210ENST00000471188 RFX8Q6ZV50 586 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms