RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 CFAP221Q4G0U5 840 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 C8orf74Q6P047 294 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 TSEN2Q8NCE0 465 aaKnown RBP20.87■□□□□ 0.93
VIM-203ENST00000469543 KRT12Q99456 494 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 FAM153AQ9UHL3 310 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 CCPG1Q9ULG6 757 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 PCDHGC5Q9Y5F6 944 aa20.87■□□□□ 0.93
VIM-203ENST00000469543 ZNF536O15090 1300 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 WNT10BO00744 389 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 KCNK3O14649 394 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 MAP9Q49MG5 647 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 HOOK2Q96ED9 719 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 TUFT1Q9NNX1 390 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 PLCB1Q9NQ66 1216 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 STIM2Q9P246 746 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 FZD1Q9UP38 647 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 SAMM50Q9Y512 469 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 KCNA3P22001 575 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 HOXA7P31268 230 aaPredicted RBP20.86■□□□□ 0.93
VIM-203ENST00000469543 KLHL7Q8IXQ5 586 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 FAM71BQ8TC56 605 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 NFU1Q9UMS0 254 aa20.86■□□□□ 0.93
VIM-203ENST00000469543 DDX3XO00571 662 aaKnown RBP eCLIP20.85■□□□□ 0.93
VIM-203ENST00000469543 ZNF572Q7Z3I7 529 aaPredicted RBP20.85■□□□□ 0.93
VIM-203ENST00000469543 GLYCTKQ8IVS8 523 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 ELMO3Q96BJ8 720 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 EPB41L5Q9HCM4 733 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 MRPL11Q9Y3B7 192 aaKnown RBP20.85■□□□□ 0.93
VIM-203ENST00000469543 HIP1RO75146 1068 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 PSMC2P35998 433 aaKnown RBP20.85■□□□□ 0.93
VIM-203ENST00000469543 GUCY2DQ02846 1103 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 ZSCAN26Q16670 478 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 PALB2Q86YC2 1186 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 SUPT20HQ8NEM7 779 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 U2AF1L4Q8WU68 220 aaKnown RBP20.85■□□□□ 0.93
VIM-203ENST00000469543 RAVER2Q9HCJ3 691 aaKnown RBP20.85■□□□□ 0.93
VIM-203ENST00000469543 OSGEPQ9NPF4 335 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 AGPAT3Q9NRZ7 376 aa20.85■□□□□ 0.93
VIM-203ENST00000469543 SLC26A4O43511 780 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 EVI5O60447 810 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 ALAS1P13196 640 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 JAM2P57087 298 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 ARHGAP44Q17R89 818 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 MUM1L1Q5H9M0 696 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 ARHGAP27Q6ZUM4 889 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 NACC1Q96RE7 527 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 AP1M1Q9BXS5 423 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 ASTN2O75129 1339 aaPredicted RBP20.84■□□□□ 0.93
VIM-203ENST00000469543 MCM3P25205 808 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 CXCL9Q07325 125 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 SPP2Q13103 211 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 ITGB3BPQ13352 177 aaPredicted RBP20.84■□□□□ 0.93
VIM-203ENST00000469543 CCDC70Q6NSX1 233 aa20.84■□□□□ 0.93
VIM-203ENST00000469543 ABCB4P21439 1286 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 RXRBP28702 533 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 FMO5P49326 533 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 PPARDQ03181 441 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 MAPK7Q13164 816 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 SYCP3Q8IZU3 236 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 INPP4AQ96PE3 977 aaPredicted RBP20.83■□□□□ 0.93
VIM-203ENST00000469543 MXRA8Q9BRK3 442 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 VIPAS39Q9H9C1 493 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 METTL14Q9HCE5 456 aaKnown RBP20.83■□□□□ 0.93
VIM-203ENST00000469543 GPRC5CQ9NQ84 441 aa20.83■□□□□ 0.93
VIM-203ENST00000469543 CHORDC1Q9UHD1 332 aaPredicted RBP20.83■□□□□ 0.93
VIM-203ENST00000469543 GOLGA6BA6NDN3 693 aa20.83■□□□□ 0.92
VIM-203ENST00000469543 AARSP49588 968 aaKnown RBP eCLIP20.83■□□□□ 0.92
VIM-203ENST00000469543 GUCY2FP51841 1108 aa20.83■□□□□ 0.92
VIM-203ENST00000469543 MRPS9P82933 396 aaKnown RBP20.83■□□□□ 0.92
VIM-203ENST00000469543 TXLNBQ8N3L3 684 aa20.83■□□□□ 0.92
VIM-203ENST00000469543 MSL3Q8N5Y2 521 aaKnown RBP20.83■□□□□ 0.92
VIM-203ENST00000469543 LNX1Q8TBB1 728 aaPredicted RBP20.83■□□□□ 0.92
VIM-203ENST00000469543 DNAJC12Q9UKB3 198 aa20.83■□□□□ 0.92
VIM-203ENST00000469543 CCDC66A2RUB6 948 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 HEXIM1O94992 359 aaKnown RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 GAP43P17677 238 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 EIF2AK2P19525 551 aaKnown RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 DRAP1Q14919 205 aaPredicted RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 DNAJC21Q5F1R6 531 aaKnown RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 PADI6Q6TGC4 694 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 WNK4Q96J92 1243 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 TEKT3Q9BXF9 490 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 RABEP2Q9H5N1 569 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 MED4Q9NPJ6 270 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 LUC7LQ9NQ29 371 aaKnown RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 TAS2R14Q9NYV8 317 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 ZHX2Q9Y6X8 837 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 ARHGEF35A5YM69 484 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 DHX15O43143 795 aaKnown RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 EXOC3O60645 756 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 ATP9AO75110 1047 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 ITIH3Q06033 890 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 RASA3Q14644 834 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 ZNF772Q68DY9 489 aaPredicted RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 TTC19Q6DKK2 380 aaPredicted RBP20.82■□□□□ 0.92
VIM-203ENST00000469543 B3GNT9Q6UX72 402 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 OLIG1Q8TAK6 271 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 CLEC4DQ8WXI8 215 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 PGAP2Q9UHJ9 254 aa20.82■□□□□ 0.92
VIM-203ENST00000469543 PTGER2P43116 358 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms