RNA–Protein interactions for RNA: ENST00000463622.6

SCFD1-204, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 1,943 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-204ENST00000463622 SAGE1Q9NXZ1 904 aa4.68□□□□□ -1.66
SCFD1-204ENST00000463622 GPRC5DQ9NZD1 345 aa4.68□□□□□ -1.66
SCFD1-204ENST00000463622 CLEC1BQ9P126 229 aa4.68□□□□□ -1.66
SCFD1-204ENST00000463622 FER1L6Q2WGJ9 1857 aa4.68□□□□□ -1.66
SCFD1-204ENST00000463622 TJP1Q07157 1748 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 SMAD7O15105 426 aaKnown RBP4.67□□□□□ -1.66
SCFD1-204ENST00000463622 ERCC5P28715 1186 aaPredicted RBP4.67□□□□□ -1.66
SCFD1-204ENST00000463622 MC3RP41968 323 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 CTSWP56202 376 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 ADGRG2Q8IZP9 1017 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 RCC1LQ96I51 464 aaKnown RBP4.67□□□□□ -1.66
SCFD1-204ENST00000463622 KCNC2Q96PR1 638 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 GLIS2Q9BZE0 524 aaPredicted RBP4.67□□□□□ -1.66
SCFD1-204ENST00000463622 CAPN10Q9HC96 672 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 SLX4Q8IY92 1834 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 DLEC1Q9Y238 1755 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 THSD7BQ9C0I4 1608 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 MRC1P22897 1456 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 TIAM2Q8IVF5 1701 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 ZNF521Q96K83 1311 aa4.67□□□□□ -1.66
SCFD1-204ENST00000463622 AFDNP55196 1824 aaKnown RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 NPHP3-ACAD11A0A0J9YXS1 232 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 ANKRD34BA5PLL1 514 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 B2RBV5 119 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 NPHP1O15259 732 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 ATF2P15336 505 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 TMPOP42166 694 aaKnown RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 CXCL9Q07325 125 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 SCRN1Q12765 414 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 MBLAC2Q68D91 279 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 TTC5Q8N0Z6 440 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 FEZF2Q8TBJ5 459 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 RUNDC1Q96C34 613 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 GCC1Q96CN9 775 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 APBA2Q99767 749 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 RNF186Q9NXI6 227 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 SIT1Q9Y3P8 196 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 USP16Q9Y5T5 823 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 IRS2Q9Y4H2 1338 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 DICER1Q9UPY3 1922 aaKnown RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 A0A0G2JLL6 359 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 SRGAP3O43295 1099 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 KCNQ3O43525 872 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 GLI4P10075 376 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 PLS3P13797 630 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 PAMP19021 973 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 KIF23Q02241 960 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 HABP4Q5JVS0 413 aaKnown RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 LARP1BQ659C4 914 aaKnown RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 C6orf15Q6UXA7 325 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 CTU1Q7Z7A3 348 aaKnown RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 TMEM151BQ8IW70 566 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 LZTR1Q8N653 840 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 USP33Q8TEY7 942 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 CRAMP1Q96RY5 1269 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 RTFDC1Q9BY42 306 aaPredicted RBP4.66□□□□□ -1.66
SCFD1-204ENST00000463622 NUDCQ9Y266 331 aa4.66□□□□□ -1.66
SCFD1-204ENST00000463622 DLG5Q8TDM6 1919 aa4.65□□□□□ -1.66
SCFD1-204ENST00000463622 C7orf72A4D263 438 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 OTOL1A6NHN0 477 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-204ENST00000463622 TBX1O43435 398 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 IGFBP6P24592 240 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-204ENST00000463622 ETFBP38117 255 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 GMPSP49915 693 aaPredicted RBP4.65□□□□□ -1.67
SCFD1-204ENST00000463622 HUNKP57058 714 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 CORO7P57737 925 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 GRB10Q13322 594 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 NFE2L2Q16236 605 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 PKN2Q16513 984 aaKnown RBP4.65□□□□□ -1.67
SCFD1-204ENST00000463622 HLFQ16534 295 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 RGMBQ6NW40 437 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 MCM10Q7L590 875 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 NPM2Q86SE8 214 aaKnown RBP4.65□□□□□ -1.67
SCFD1-204ENST00000463622 NIM1KQ8IY84 436 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 BVESQ8NE79 360 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 MICAL1Q8TDZ2 1067 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 NIP7Q9Y221 180 aaKnown RBP eCLIP4.65□□□□□ -1.67
SCFD1-204ENST00000463622 ZNF652Q9Y2D9 606 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 EMC9Q9Y3B6 208 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 COL4A5P29400 1685 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 ANKRD31Q8N7Z5 1873 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 LTBP1Q14766 1721 aa4.65□□□□□ -1.67
SCFD1-204ENST00000463622 CCDC88AQ3V6T2 1871 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 A0A1B0GTL3 188 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 PLA2G1BP04054 148 aaKnown RBP4.64□□□□□ -1.67
SCFD1-204ENST00000463622 FUCA1P04066 466 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 SSBP05455 408 aaKnown RBP eCLIP4.64□□□□□ -1.67
SCFD1-204ENST00000463622 SNRPA1P09661 255 aaKnown RBP4.64□□□□□ -1.67
SCFD1-204ENST00000463622 PFKLP17858 780 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 RIPK4P57078 832 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 FOXO4P98177 505 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 INF2Q27J81 1249 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 GTF2IRD2BQ6EKJ0 949 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 GTF2IRD2Q86UP8 949 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 TP53I13Q8NBR0 393 aaPredicted RBP4.64□□□□□ -1.67
SCFD1-204ENST00000463622 ALG3Q92685 438 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 SYT3Q9BQG1 590 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 MTA3Q9BTC8 594 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 KRTAP4-9Q9BYQ8 210 aa4.64□□□□□ -1.67
SCFD1-204ENST00000463622 STRIP2Q9ULQ0 834 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms