RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 CCDC25Q86WR0 208 aa13.55□□□□□ -0.24
HDAC4-208ENST00000463007 ZKSCAN4Q969J2 545 aaPredicted RBP13.55□□□□□ -0.24
HDAC4-208ENST00000463007 OSGEPQ9NPF4 335 aa13.55□□□□□ -0.24
HDAC4-208ENST00000463007 CEP72Q9P209 647 aa13.55□□□□□ -0.24
HDAC4-208ENST00000463007 NYAP2Q9P242 653 aa13.55□□□□□ -0.24
HDAC4-208ENST00000463007 PNMA2Q9UL42 364 aa13.55□□□□□ -0.24
HDAC4-208ENST00000463007 CTNND1O60716 968 aaKnown RBP13.54□□□□□ -0.24
HDAC4-208ENST00000463007 FGGP02679 453 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 CLTAP09496 248 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 EPB41P11171 864 aaKnown RBP13.54□□□□□ -0.24
HDAC4-208ENST00000463007 HNRNPH3P31942 346 aaKnown RBP13.54□□□□□ -0.24
HDAC4-208ENST00000463007 PLS1Q14651 629 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 PPP1R7Q15435 360 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 FAM133BQ5BKY9 247 aaKnown RBP13.54□□□□□ -0.24
HDAC4-208ENST00000463007 STYK1Q6J9G0 422 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 AADACL2Q6P093 401 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 OSBPL7Q9BZF2 842 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 CYP3A7-CYP3A51PA0A087WV96 503 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 KIF4AO95239 1232 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 CCDC172P0C7W6 258 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 CYP3A7P24462 503 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 PLTPP55058 493 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 RAPGEF5Q92565 580 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 RAB34Q9BZG1 259 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 DHX36Q9H2U1 1008 aaKnown RBP13.54□□□□□ -0.24
HDAC4-208ENST00000463007 KCNMB3Q9NPA1 279 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 EMILIN3Q9NT22 766 aa13.54□□□□□ -0.24
HDAC4-208ENST00000463007 DDX25Q9UHL0 483 aaKnown RBP13.54□□□□□ -0.24
HDAC4-208ENST00000463007 HMGB1P1B2RPK0 211 aaPredicted RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 NF2P35240 595 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 LRRC63Q05C16 580 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 HIBCHQ6NVY1 386 aaPredicted RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 TEX2Q8IWB9 1127 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 RNF10Q8N5U6 811 aaKnown RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 FLAD1Q8NFF5 587 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 WHAMMQ8TF30 809 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 DNAJC19Q96DA6 116 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 DBNDD1Q9H9R9 158 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 TMBIM4Q9HC24 238 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 ODF2LQ9ULJ1 636 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 SKAP2O75563 359 aaPredicted RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 KCNA1Q09470 495 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 ZCWPW2Q504Y3 356 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 CACNA2D3Q8IZS8 1091 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 DCAF4Q8WV16 495 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 CUL5Q93034 780 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 SEC16BQ96JE7 1060 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 ABCB11O95342 1321 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 HLA-DOAP06340 250 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 VIMP08670 466 aaKnown RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 HOXA7P31268 230 aaPredicted RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 MMP14P50281 582 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 JAG1P78504 1218 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 GLE1Q53GS7 698 aaKnown RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 OTUD6AQ7L8S5 288 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 DNAJC17Q9NVM6 304 aaKnown RBP13.53□□□□□ -0.24
HDAC4-208ENST00000463007 SERPINA10Q9UK55 444 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 HDAC9Q9UKV0 1011 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 SNX24Q9Y343 169 aa13.53□□□□□ -0.24
HDAC4-208ENST00000463007 COL4A5P29400 1685 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 SSU72P8A0A1W2PR75 194 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 SPDYE3A6NKU9 549 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 FOXO6A8MYZ6 492 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 PJA2O43164 708 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 SHBGP04278 402 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 GCFC2P16383 781 aaKnown RBP13.52□□□□□ -0.24
HDAC4-208ENST00000463007 CASP4P49662 377 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 PSMC6P62333 389 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 SPIRE1Q08AE8 756 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 ARHGAP44Q17R89 818 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 UBAP2Q5T6F2 1119 aaKnown RBP13.52□□□□□ -0.24
HDAC4-208ENST00000463007 GMCL1P1Q8NEA9 526 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 YY1AP1Q9H869 796 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 TMOD4Q9NZQ9 345 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 PCDHA2Q9Y5H9 948 aa13.52□□□□□ -0.24
HDAC4-208ENST00000463007 FAM196BA6NMK8 535 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 PGRMC1O00264 195 aaKnown RBP13.52□□□□□ -0.25
HDAC4-208ENST00000463007 MEIS2O14770 477 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 ECE2O60344 883 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 CAND2O75155 1236 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 EEF2P13639 858 aaKnown RBP13.52□□□□□ -0.25
HDAC4-208ENST00000463007 LRRC14Q15048 493 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 TBC1D10BQ4KMP7 808 aaPredicted RBP13.52□□□□□ -0.25
HDAC4-208ENST00000463007 VCPKMTQ9H867 229 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 TSKSQ9UJT2 592 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 PTPN22Q9Y2R2 807 aa13.52□□□□□ -0.25
HDAC4-208ENST00000463007 RSPH10B2B2RC85 870 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 CETN3O15182 167 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 LRRN2O75325 713 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 PLA2G4BP0C869 781 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 RSPH10BP0C881 870 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 CACNB3P54284 484 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 ITIH3Q06033 890 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 QRICH1Q2TAL8 776 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 TBC1D1Q86TI0 1168 aaPredicted RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 GLYCTKQ8IVS8 523 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 AJAP1Q9UKB5 411 aaPredicted RBP13.51□□□□□ -0.25
HDAC4-208ENST00000463007 SLC26A4O43511 780 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 FSBPO95073 299 aa13.51□□□□□ -0.25
HDAC4-208ENST00000463007 LCA5LO95447 670 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms