RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 ELP3Q9H9T3 547 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 SEPT9Q9UHD8 586 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 EYA4O95677 639 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 HOXA7P31268 230 aaPredicted RBP12.62□□□□□ -0.39
NPHP4-204ENST00000460696 EMBQ6PCB8 327 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 B4GALNT4Q76KP1 1039 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 DNAAF5Q86Y56 855 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 CYP2W1Q8TAV3 490 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 DEPTORQ8TB45 409 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 TMEM39BQ9GZU3 492 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 KMT5AQ9NQR1 393 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 ANKFY1Q9P2R3 1169 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 GINS2Q9Y248 185 aa12.62□□□□□ -0.39
NPHP4-204ENST00000460696 A0A087X0T9 212 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 SSU72P8A0A1W2PR75 194 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 FAM228BP0C875 321 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 CD19P15391 556 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 RPA1P27694 616 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 PDE6CP51160 858 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 PSMC6P62333 389 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 ZNF211Q13398 564 aaPredicted RBP12.61□□□□□ -0.39
NPHP4-204ENST00000460696 ZNF653Q96CK0 615 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 CABS1Q96KC9 395 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 NT5C1BQ96P26 610 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 C1orf112Q9NSG2 853 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 CEP83Q9Y592 693 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 PDXKO00764 312 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 SLC16A4O15374 487 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 LIG3P49916 1009 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 DHX9Q08211 1270 aaKnown RBP12.61□□□□□ -0.39
NPHP4-204ENST00000460696 MTMR3Q13615 1198 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 DENND2CQ68D51 928 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 TRAPPC11Q7Z392 1133 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 ANKRD35Q8N283 1001 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 C4orf32Q8N8J7 132 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 PBKQ96KB5 322 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 RMDN3Q96TC7 470 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 DAAM1Q9Y4D1 1078 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 PCDHAC2Q9Y5I4 1007 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 SASH3O75995 380 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 IREB2P48200 963 aaKnown RBP12.61□□□□□ -0.39
NPHP4-204ENST00000460696 MTMR1Q13613 665 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 C10orf76Q5T2E6 689 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 GJB7Q6PEY0 223 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 DCUN1D2Q6PH85 259 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 DLK2Q6UY11 383 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 IRF2BP1Q8IU81 584 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 GLG1Q92896 1179 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 TMEM206Q9H813 350 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 ANKZF1Q9H8Y5 726 aa12.61□□□□□ -0.39
NPHP4-204ENST00000460696 RBM12Q9NTZ6 932 aaKnown RBP12.61□□□□□ -0.39
NPHP4-204ENST00000460696 RRP15Q9Y3B9 282 aaKnown RBP12.61□□□□□ -0.39
NPHP4-204ENST00000460696 PARP4Q9UKK3 1724 aaKnown RBP12.6□□□□□ -0.39
NPHP4-204ENST00000460696 DESP17661 470 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 POLGP54098 1239 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-204ENST00000460696 SPP2Q13103 211 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 PDCLQ13371 301 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 TRPC3Q13507 836 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 GNPTABQ3T906 1256 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 CCNI2Q6ZMN8 369 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-204ENST00000460696 FRMD5Q7Z6J6 570 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 SHISA4Q96DD7 197 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 FAM163AQ96GL9 167 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-204ENST00000460696 A0A1W2PQJ5 194 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 NOP56O00567 594 aaKnown RBP12.6□□□□□ -0.39
NPHP4-204ENST00000460696 MSH4O15457 936 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 ARHGAP25P42331 645 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 LIN9Q5TKA1 542 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 RSBN1LQ6PCB5 846 aaPredicted RBP12.6□□□□□ -0.39
NPHP4-204ENST00000460696 CERS5Q8N5B7 392 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 MGARPQ8TDB4 240 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 HERC5Q9UII4 1024 aaKnown RBP12.6□□□□□ -0.39
NPHP4-204ENST00000460696 PDE4DIPQ5VU43 2346 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 CYP2C19P33261 490 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 CASP4P49662 377 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 PTK2Q05397 1052 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 MTERF2Q49AM1 385 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 DEFB129Q9H1M3 183 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 MYOZ2Q9NPC6 264 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 L1RE1Q9UN81 338 aa12.6□□□□□ -0.39
NPHP4-204ENST00000460696 ADM5C9JUS6 153 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 RGS16O15492 202 aaPredicted RBP12.59□□□□□ -0.39
NPHP4-204ENST00000460696 HIP1RO75146 1068 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 KRT19P08727 400 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 SNX1Q13596 522 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 SCFD1Q8WVM8 642 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 STMN4Q9H169 189 aaPredicted RBP12.59□□□□□ -0.39
NPHP4-204ENST00000460696 DMGDHQ9UI17 866 aaKnown RBP12.59□□□□□ -0.39
NPHP4-204ENST00000460696 MYH2Q9UKX2 1941 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 MFAP3P55082 362 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 APOBEC3HQ6NTF7 200 aaKnown RBP12.59□□□□□ -0.39
NPHP4-204ENST00000460696 EEPD1Q7L9B9 569 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 ANKS4BQ8N8V4 417 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.59□□□□□ -0.39
NPHP4-204ENST00000460696 A6NNZ2 444 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 EDRF1Q3B7T1 1238 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 TUBB8Q3ZCM7 444 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 RNF207Q6ZRF8 634 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 XXYLT1Q8NBI6 393 aa12.59□□□□□ -0.39
NPHP4-204ENST00000460696 SAAL1Q96ER3 474 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms